All Publications | Max Planck Institute of Molecular Plant Physiology

Max Planck Institute of Molecular Plant Physiology

Journal Article (4082)

2401.

Journal Article

Gonzalez-Rabade, N.; McGowan, E. G.; Zhou, F.; McCabe, M. S.; Bock, R.; Dix, P. J.; Gray, J. C.; Ma, J. K. C.: Immunogenicity of chloroplast-derived HIV-1 p24 and a p24-Nef fusion protein following subcutaneous and oral administration in mice. Plant Biotechnology Journal 9 (6), pp. 629 - 638 (2011)

MPG.PuRe

2402.

Journal Article

Graf, A.; Smith, A. M.: Starch and the clock: the dark side of plant productivity. Trends in Plant Science 16 (3), pp. 169 - 175 (2011)

MPG.PuRe

2403.

Journal Article

Grimbs, S.; Arnold, A.; Koseka, A.; Kurths, J.; Selbig, J.; Nikoloski, Z.: Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosystems 103 (2), pp. 212 - 223 (2011)

MPG.PuRe

2404.

Journal Article

Gunl, M.; Neumetzler, L.; Kraemer, F.; de Souza, A.; Schultink, A.; Pena, M.; York, W. S.; Pauly, M.: AXY8 encodes an alpha-fucosidase, underscoring the importance of apoplastic metabolism on the fine structure of Arabidopsis cell wall polysaccharides. The Plant Cell 23 (11), pp. 4025 - 4040 (2011)

MPG.PuRe

2405.

Journal Article

Gur, A.; Semel, Y.; Osorio, S.; Friedmann, M.; Seekh, S.; Ghareeb, B.; Mohammad, A.; Pleban, T.; Gera, G.; Fernie, A. R. et al.; Zamir, D.: Yield quantitative trait loci from wild tomato are predominately expressed by the shoot. Theoretical and Applied Genetics 122 (2), pp. 405 - 420 (2011)

MPG.PuRe

2406.

Journal Article

Gutzat, R.; Borghi, L.; Fuetterer, J.; Bischof, S.; Laizet, Y.; Hennig, L.; Feil, R.; Lunn, J.; Gruissem, W.: RETINOBLASTOMA-RELATED PROTEIN controls the transition to autotrophic plant development. Development 138 (14), pp. 2977 - 2986 (2011)

MPG.PuRe

2407.

Journal Article

Guziolowski, C.; Blachon, S.; Baumuratova, T.; Stoll, G.; Radulescu, O.; Siegel, A.: Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE-ACM Transactions on Computational Biology and Bioinformatics 8 (5), pp. 1223 - 1234 (2011)

MPG.PuRe

2408.

Journal Article

Hackenberg, C.; Kern, R.; Huege, J.; Stal, L. J.; Tsuji, Y.; Kopka, J.; Shiraiwa, Y.; Bauwe, H.; Hagemann, M.: Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. The Plant Cell 23 (8), pp. 2978 - 2990 (2011)

MPG.PuRe

2409.

Journal Article

Haedrich, N.; Gibon, Y.; Schudoma, C.; Altmann, T.; Lunn, J. E.; Stitt, M.: Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. Journal of Plant Physiology 168 (12), pp. 1395 - 1405 (2011)

MPG.PuRe

2410.

Journal Article

Hempel, S.; Koseska, A.; Nikoloski, Z.; Kurths, J.: Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 12, p. 292 (2011)

MPG.PuRe

2411.

Journal Article

Hempel, S.; Kurths, J.; Koseska, A.; Nikoloski, Z.: Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters 107 (5), p. 054101 (2011)

MPG.PuRe

2412.

Journal Article

Hoehenwarter, W.; Larhlimi, A.; Hummel, J.; Egelhofer, V.; Selbig, J.; van Dongen, J. T.; Wienkoop, S.; Weckwerth, W.: MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10 (7), pp. 2979 - 2991 (2011)

MPG.PuRe

2413.

Journal Article

Howard, T. P.; Fryer, M. J.; Singh, P.; Metodiev, M.; Lytovchenko, A.; Obata, T.; Fernie, A. R.; Kruger, N. J.; Quick, W. P.; Lloyd, J. C. et al.; Raines, C. A.: Antisense Suppression of the Small Chloroplast Protein CP12 in Tobacco Alters Carbon Partitioning and Severely Restricts Growth. Plant Physiology 157 (2), pp. 620 - 631 (2011)

MPG.PuRe

2414.

Journal Article

Huege, J.; Goetze, J.; Schwarz, D.; Bauwe, H.; Hagemann, M.; Kopka, J.: Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis. PLoS One 6 (1), p. e16278 (2011)

MPG.PuRe

2415.

Journal Article

Huege, J.; Krall, L.; Steinhauser, M.-C.; Giavalisco, P.; Rippka, R.; de Marsac, N. T.; Steinhauser, D.: Sample amount alternatives for data adjustment in comparative cyanobacterial metabolomics. Analytical and Bioanalytical Chemistry 399 (10), pp. 3503 - 3517 (2011)

MPG.PuRe

2416.

Journal Article

Hummel, J.; Segu, S.; Li, Y.; Irgang, S.; Jueppner, J.; Giavalisco, P.: Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 2, p. 54 (2011)

MPG.PuRe

2417.

Journal Article

Hundertmark, M.; Buitink, J.; Leprince, O.; Hincha, D. K.: The reduction of seed-specific dehydrins reduces seed longevity in Arabidopsis thaliana. Seed Science Research 21 (3), pp. 165 - 173 (2011)

MPG.PuRe

2418.

Journal Article

Hundertmark, M.; Dimova, R.; Lengefeld, J.; Seckler, R.; Hincha, D. K.: The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding. Biochimica et Biophysica Acta-Biomembranes 1808 (1), pp. 446 - 453 (2011)

MPG.PuRe

2419.

Journal Article

Iftime, D.; Hannah, M. A.; Peterbauer, T.; Heyer, A. G.: Stachyose in the cytosol does not influence freezing tolerance of transgenic Arabidopsis expressing stachyose synthase from adzuki bean. Plant Science 180 (1), pp. 24 - 30 (2011)

MPG.PuRe

2420.

Journal Article

Janssen, S.; Schudoma, C.; Steger, G.; Giegerich, R.: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12 (1), p. 429 (2011)

MPG.PuRe

2421.

Journal Article

Joshi, H. J.; Hirsch-Hoffmann, M.; Baerenfaller, K.; Gruissem, W.; Baginsky, S.; Schmidt, R.; Schulze, W. X.; Sun, Q.; van Wijk, K. J.; Egelhofer, V. et al.; Wienkoop, S.; Weckwerth, W.; Bruley, C.; Rolland, N.; Toyoda, T.; Nakagami, H.; Jones, A. M.; Briggs, S. P.; Castleden, I.; Tanz, S. K.; Millar, A. H.; Heazlewood, J. L.: MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155 (1), pp. 259 - 270 (2011)

MPG.PuRe

2422.

Journal Article

Jurchott, K.; Guo, K. T.; Catchpole, G.; Feher, K.; Willmitzer, L.; Schichor, C.; Selbig, J.: Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells. Biosystems 105 (2), pp. 130 - 139 (2011)

MPG.PuRe

2423.

Journal Article

Karlova, R.; Rosin, F. M.; Busscher-Lange, J.; Parapunova, V.; Do, P. T.; Fernie, A. R.; Fraser, P. D.; Baxter, C.; Angenent, G. C.; de Maagd, R. A.: Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening. The Plant Cell 23 (3), pp. 923 - 941 (2011)

MPG.PuRe

2424.

Journal Article

Kartal, O.; Mahlow, S.; Skupin, A.; Ebenhoeh, O.: Carbohydrate-active enzymes exemplify entropic principles in metabolism. Molecular Systems Biology 7, p. 542 (2011)

MPG.PuRe

2425.

Journal Article

Klie, S.; Krueger, S.; Krall, L.; Giavalisco, P.; Fluegge, U.-I.; Willmitzer, L.; Steinhauser, D.: Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, p. 55 (2011)

MPG.PuRe

2426.

Journal Article

Kochevenko, A.; Fernie, A. R.: The genetic architecture of branched-chain amino acid accumulation in tomato fruits. Journal of Experimental Botany 62 (11), pp. 3895 - 3906 (2011)

MPG.PuRe

2427.

Journal Article

Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), p. e17806 (2011)

MPG.PuRe

2428.

Journal Article

Kusano, M.; Tohge, T.; Fukushima, A.; Kobayashi, M.; Hayashi, N.; Otsuki, H.; Kondou, Y.; Goto, H.; Kawashima, M.; Matsuda, F. et al.; Niida, R.; Matsui, M.; Saito, K.; Fernie, A. R.: Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. The Plant Journal 67 (2), pp. 354 - 369 (2011)

MPG.PuRe

2429.

Journal Article

Lai, A. G.; Denton-Giles, M.; Mueller-Roeber, B.; Schippers, J. H. M.; Dijkwel, P. P.: Positional Information Resolves Structural Variations and Uncovers an Evolutionarily Divergent Genetic Locus in Accessions of Arabidopsis thaliana. Genome Biology and Evolution 3, pp. 627 - 640 (2011)

MPG.PuRe

2430.

Journal Article

Lenz, D.; May, P.; Walther, D.: Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 4, p. 483 (2011)

MPG.PuRe

2431.

Journal Article

Li, W.; Ruf, S.; Bock, R.: Chloramphenicol acetyltransferase as selectable marker for plastid transformation. Plant Molecular Biology 76 (3-5), pp. 443 - 451 (2011)

MPG.PuRe

2432.

Journal Article

Licausi, F.; Giorgi, F. M.; Schmalzlin, E.; Usadel, B.; Perata, P.; van Dongen, J. T.; Geigenberger, P.: HRE-Type Genes Are Regulated by Growth-Related Changes in Internal Oxygen Concentrations During the Normal Development of Potato (Solanum tuberosum) Tubers. Plant & Cell Physiology 52 (11), pp. 1957 - 1972 (2011)

MPG.PuRe

2433.

Journal Article

Licausi, F.; Kosmacz, M.; Weits, D. A.; Giuntoli, B.; Giorgi, F. M.; Voesenek, L. A. C. J.; Perata, P.; van Dongen, J. T.: Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization. Nature 479 (7373), pp. 419 - 422 (2011)

MPG.PuRe

2434.

Journal Article

Licausi, F.; Weits, D. A.; Pant, B. D.; Scheible, W.-R.; Geigenberger, P.; van Dongen, J. T.: Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. New Phytologist 190 (2), pp. 442 - 456 (2011)

MPG.PuRe

2435.

Journal Article

Lisec, J.; Romisch-Margl, L.; Nikoloski, Z.; Piepho, H. P.; Giavalisco, P.; Selbig, J.; Gierl, A.; Willmitzer, L.: Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 68 (2), pp. 326 - 336 (2011)

MPG.PuRe

2436.

Journal Article

Lisso, J.; Schroeder, F.; Fisahn, J.; Muessig, C.: NFX1-LIKE2 (NFXL2) Suppresses Abscisic Acid Accumulation and Stomatal Closure in Arabidopsis thaliana. PLoS One 6 (11), p. e26982 (2011)

MPG.PuRe

2437.

Journal Article

Llorente, B.; Alonso, G. D.; Bravo-Almonacid, F.; Rodriguez, V.; Lopez, M. G.; Carrari, F.; Torres, H. N.; Flawia, M. M.: Safety assessment of nonbrowning potatoes: opening the discussion about the relevance of substantial equivalence on next generation biotech crops. Plant Biotechnology Journal 9 (2), pp. 136 - 150 (2011)

MPG.PuRe

2438.

Journal Article

Lombardo, V. A.; Osorio, S.; Borsani, J.; Lauxmann, M. A.; Bustamante, C. A.; Budde, C. O.; Andreo, C. S.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Metabolic profiling during peach fruit development and ripening reveals the metabolic networks that underpin each developmental stage. Plant Physiology 157 (4), pp. 1696 - 1710 (2011)

MPG.PuRe

2439.

Journal Article

Lytovchenko, A.; Eickmeier, I.; Pons, C.; Osorio, S.; Szecowka, M.; Lehmberg, K.; Arrivault, S.; Tohge, T.; Pineda, B.; Anton, M. T. et al.; Hedtke, B.; Lu, Y.; Fisahn, J.; Bock, R.; Stitt, M.; Grimm, B.; Granell, A.; Fernie, A. R.: Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiology 157 (4), pp. 1650 - 1663 (2011)

MPG.PuRe

2440.

Journal Article

Maitrejean, M.; Wudick, M. M.; Voelker, C.; Prinsi, B.; Mueller-Roeber, B.; Czempinski, K.; Pedrazzini, E.; Vitale, A.: Assembly and Sorting of the Tonoplast Potassium Channel AtTPK1 and Its Turnover by Internalization into the Vacuole. Plant Physiology 156 (4), pp. 1783 - 1796 (2011)

MPG.PuRe

2441.

Journal Article

Maliga, P.; Bock, R.: Plastid Biotechnology: Food, Fuel, and Medicine for the 21st Century. Plant Physiology 155 (4), pp. 1501 - 1510 (2011)

MPG.PuRe

2442.

Journal Article

Marin, I. C.; Loef, I.; Bartetzko, L.; Searle, I.; Coupland, G.; Stitt, M.; Osuna, D.: Nitrate regulates floral induction in Arabidopsis, acting independently of light, gibberellin and autonomous pathways. Planta 233 (3), pp. 539 - 552 (2011)

MPG.PuRe

2443.

Journal Article

Matas, A. J.; Yeats, T. H.; Buda, G. J.; Zheng, Y.; Chatterjee, S.; Tohge, T.; Ponnala, L.; Adato, A.; Aharoni, A.; Stark, R. et al.; Fernie, A. R.; Fei, Z.; Giovannoni, J. J.; Rose, J. K. C.: Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation. The Plant Cell 23 (11), pp. 3893 - 3910 (2011)

MPG.PuRe

2444.

Journal Article

McKeown, P.C.; Laouielle-Duprat, S.; Prins, P.; Wolff, P.; Schmid, M.W.; Donoghue, M.T.A.; Fort, A.; Duszynska, D.; Comte, A.; Lao, N.T. et al.; Wennblom, T.J.; Smant, G.; Köhler, C.; Grossniklaus, U.; Spillane, C.: Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. BMC Plant Biology 11, 113 (2011)

MPG.PuRe

2445.

Journal Article

Meitzel, T.; Radchuk, R.; Nunes-Nesi, A.; Fernie, A. R.; Link, W.; Weschke, W.; Weber, H.: Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development. Plant Journal 65 (4), pp. 517 - 531 (2011)

MPG.PuRe

2446.

Journal Article

Michaeli, S.; Fait, A.; Lagor, K.; Nunes-Nesi, A.; Grillich, N.; Yellin, A.; Bar, D.; Khan, M.; Fernie, A. R.; Turano, F. J. et al.; Fromm, H.: A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism. The Plant Journal 67 (3), pp. 485 - 498 (2011)

MPG.PuRe

2447.

Journal Article

Moheimani, N. R.; Isdepsky, A.; Lisec, J.; Raes, E.; Borowitzka, M. A.: Coccolithophorid Algae Culture in Closed Photobioreactors. Biotechnology and Bioengineering 108 (9), pp. 2078 - 2087 (2011)

MPG.PuRe

2448.

Journal Article

Moing, A.; Aharoni, A.; Biais, B.; Rogachev, I.; Meir, S.; Brodsky, L.; Allwood, J. W.; Erban, A.; Dunn, W. B.; Kay, L. et al.; de Koning, S.; de Vos, R. C. H.; Jonker, H.; Mumm, R.; Deborde, C.; Maucourt, M.; Bernillon, S.; Gibon, Y.; Hansen, T. H.; Husted, S.; Goodacre, R.; Kopka, J.; Schjoerring, J. K.; Rolin, D.; Hall, R. D.: Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytologist 190 (3), pp. 683 - 696 (2011)

MPG.PuRe

2449.

Journal Article

Molla-Morales, A.; Sarmiento-Manus, R.; Robles, P.; Quesada, V.; Perez-Perez, J. M.; Gonzalez-Bayon, R.; Hannah, M. A.; Willmitzer, L.; Ponce, M. R.; Micol, J. L.: Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development. Plant Journal 65 (3), pp. 335 - 345 (2011)

MPG.PuRe

2450.

Journal Article

Muehlhaus, T.; Weiss, J.; Hemme, D.; Sommer, F.; Schroda, M.: Quantitative shotgun proteomics using a uniform 15N-labeled standard to monitor proteome dynamics in time course experiments reveals new insights into the heat stress response of Chlamydomonas reinhardtii. Molecular and Cellular Proteomics 10 (9), p. M110 004739 (2011)

MPG.PuRe