Publications of S. Alseekh

Bolger, A. M., Scossa, F., Bolger, A. M., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S. A., Schijlen, E., Jimenez-Gomez, J. M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L. R., Maloof, J. N., Sinha, N., van Ham, R. C. H. J., Lankhorst, R. K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J. K. C., Zamir, D., Carrari, F. F., Giovannoni, J. J., Weigel, D., Usadel, B. & Fernie, A. R. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46, 1034–1038 (2014).

Malinova, I., Mahlow, S., Alseekh, S., Orawetz, T., Fernie, A. R., Baumann, O., Steup, M. & Fettke, J. Double Knockout Mutants of Arabidopsis Grown under Normal Conditions Reveal that the Plastidial Phosphorylase Isozyme Participates in Transitory Starch Metabolism. Plant Physiology 164, 907–921 (2014).

Malinova, I., Kunz, H.-H., Alseekh, S., Herbst, K., Fernie, A. R., Gierth, M. & Fettke, J. Reduction of the Cytosolic Phosphoglucomutase in Arabidopsis Reveals Impact on Plant Growth, Seed and Root Development, and Carbohydrate Partitioning. PLoS One 9, (2014).

Malinova, I., Mahlow, S., Alseekh, S., Orawetz, T., Fernie, A. R., Baumann, O., Steup, M. & Fettke, J. Double knock-out mutants of Arabidopsis thaliana grown under normal conditions reveal that the plastidial phosphorylase isozyme (PHS1) participates in transitory starch metabolism. Plant Physiology 164, 907–921 (2013).

Toujani, W., Munoz-Bertomeu, J., Flores-Tornero, M., Rosa-Tellez, S., Anoman, A. D., Alseekh, S., Fernie, A. R. & Ros, R. Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis. Plant Physiology 163, 1164–1178 (2013).

de Godoy, F., Bermudez, L., Lira, B. S., de Souza, A. P., Elbl, P., Demarco, D., Alseekh, S., Insani, M., Buckeridge, M., Almeida, J., Grigioni, G., Fernie, A. R., Carrari, F. & Rossi, M. Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64, 2449–2466 (2013).

Zhu, F., Bulut, M., Cheng, Y., Alseekh, S. & Fernie, A. R. in Methods in Molecular Biology 2642, 241–255 (2023).

Alseekh, S. & Fernie, A. R. in Crop Breeding: Genetic Improvement Methods (ed. Tripodi, P.) 2264, 33–46 (Springer US, 2021).

Wu, S., Alseekh, S., Brotman, Y. & Fernie, A. R. in ARABIDOPSIS PROTOCOLS, 4 EDITION (eds. Sanchez-Serrano, J. J. & Salinas, J.) 2200, 393–411 (2021).

Alseekh, S., Wu, S., Brotman, Y. & Fernie, A. R. in Methods in Molecular Biology (ed. António, C.) 1778, 33–46 (Humana Press, 2018).

Li, X., Tieman, D., Alseekh, S., Fernie, A. R. & Klee, H. J. Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents. The Plant Journal 115, 1134–1150 (2023).

Sreenivasulu, N., Alseekh, S., Tiozon, R. N., Graner, A., Martin, C. & Fernie, A. R. Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health? Annual Review of Food Science and Technology 14, 183–202 (2023).

Zhu, F., Wen, W., Cheng, Y., Alseekh, S. & Fernie, A. R. Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways. aBIOTECH 4, 47–56 (2023).

Alamillo, J. M., López, C. M., Martinez Rivas, F. J., Torralbo, F., Bulut, M. & Alseekh, S. Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein and hairy roots: a perfect match for gene functional analysis and crop improvement. Current Opinion in Biotechnology 79, (2023).

Hayashi , K., Alseekh, S. & Fernie, A. R. Genetic and epigenetic control of the plant metabolome. Proteomics 23, (2023).

Alseekh, S., Scossa, F., Wen, W., Luo, J., Yan, J., Beleggia, R., Klee, H. J., Huang, S., Papa, R. & Fernie, A. R. Domestication of Crop Metabolomes: Desired and Unintended Consequences. Trends in Plant Science 26, 650–661 (2021).

de Souza, L. P., Alseekh, S., Brotman, Y. & Fernie, A. R. Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17, 243–255 (2020).

Salem, M. A., de Souza, L. P., Serag, A., Fernie, A. R., Farag, M. A., Ezzat, S. M. & Alseekh, S. Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis. Metabolites 10, (2020).

Scossa, F., Benina, M., Alseekh, S., Zhang, Y. J. & Fernie, A. R. The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants. Planta Media 84, 855–873 (2018).

Tohge, T., Alseekh, S. & Fernie, A. R. On the regulation and function of secondary metabolism during fruit development and ripening. Journal of Experimental Botany 65, 4599–4611 (2014).