Publications of S. Alseekh

Correa, S. M., Alseekh, S., Atehortúa, L., Brotman, Y., Ríos-Estepa, R., Fernie, A. R. & Nikoloski, Z. Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal 104, 76–95

Fernie, A. R. & Alseekh, S. Tomato multiomics at aPEELing resolution. Nature Plants 6, 1394–1395 (2020).

Fernie, A. R. & Alseekh, S. Publisher Correction: Tomato multiomics at aPEELing resolution (Nature Plants, (2020), 10.1038/s41477-020-00807-8). Nature Plants 6, (2020).

Gutsch, A., Hendrix, S., Guerriero, G., Renaut, J., Lutts, S., Alseekh, S., Fernie, A. R., Hausman, J.-F., Vangronsveld, J., Cuypers, A. & Sergeant, K. Long-Term Cd Exposure Alters the Metabolite Profile in Stem Tissue of Medicago sativa. Cells 9, (2020).

Jiao, C., Sørensen, I., Sun, X., Sun, H., Behar, H., Alseekh, S., Philippe, G., Palacio Lopez, K., Sun, L., Reed, R., Jeon, S., Kiyonami, R., Zhang, S., Fernie, A. R., Brumer, H., Domozych, D. S., Fei, Z. & Rose, J. K. C. The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants. Cell 181, 1097–1111.e12 (2020).

Kuhalskaya, A., Wijesingha Ahchige, M., de Souza, L. P., Vallarino, J. G., Brotman, Y. & Alseekh, S. Network analysis provides insight into tomato lipid metabolism. Metabolites 10, (2020).

Li, Y., Chen, Y., Zhou, L., You, S., Deng, H., Chen, Y., Alseekh, S., Yuan, Y., Fu, R., Zhang, Z., Su, D., Fernie, A. R., Bouzayen, M., Ma, T., Liu, M. & Zhang, Y. MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle. Molecular Plant 13, 1203–1218 (2020).

Rödiger, A., Galonska, J., Bergner, E., Agne, B., Helm, S., Alseekh, S., Fernie, A. R., Thieme, D., Hoehenwarter, W., Hause, G., Pfannschmidt, T. & Baginsky, S. Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids. The Plant Journal 104, 546–558 (2020).

Rosa-Téllez, S., Anoman, A. D., Alcántara-Enguídanos, A., Garza-Aguirre, R. A., Alseekh, S. & Ros, R. PGDH family genes differentially affect Arabidopsis tolerance to salt stress. Plant Science 290, (2020).

Salem, M. A., Radwan, R. A., Mostafa, E. S., Alseekh, S., Fernie, A. R. & Ezzat, S. M. Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs. RSC Advances 10, 31511–31524 (2020).

Salem, M. A., Yoshida, T., de Souza, L. P., Alseekh, S., Bajdzienko, K., Fernie, A. R. & Giavalisco, P. An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103, 1614–1632 (2020).

Shapiguzov, A., Nikkanen, L., Fitzpatrick, D., Vainonen, J. P., Gossens, R., Alseekh, S., Aarabi, F., Tiwari, A., Blokhina, O., Panzarová, K., Benedikty, Z., Tyystjärvi, E., Fernie, A. R., Trtílek, M., Aro, E.-M., Rintamäki, E. & Kangasjärvi, J. Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375, (2020).

Suzuki, M., Wu, S., Mimura, M., Alseekh, S., Fernie, A. R., Hanson, A. D. & McCarty, D. R. Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize. The Plant Journal 101, 442–454 (2020).

Thole, V., Vain, P., Yang, R.-Y., Almeida Barros da Silva, J., Enfissi, E. M. A., Nogueira, M., Price, E. J., Alseekh, S., Fernie, A. R., Fraser, P. D., Hanson, P. & Martin, C. Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility. Current protocols in plant biology 5, (2020).

Tohge, T., Scossa, F., Wendenburg, R., Frasse, P., Balbo, I., Watanabe, M., Alseekh, S., Jadha, S. S., Delfin, J. C., Lohse, M., Giavalisco, P., Usadel, B., Zhang, Y. J., Luo, J., Bouzayen, M. & Fernie, A. R. Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13, 1027–1046 (2020).

Wen, W., Alseekh, S. & Fernie, A. R. Conservation and diversification of flavonoid metabolism in the plant kingdom. Current Opinion in Plant Biology 55, 100–108 (2020).

Zhang, W., Alseekh, S., Zhu, X., Zhang, Q., Fernie, A. R., Kuang, H. & Wen, W. Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism. The Plant Journal 104, 613–630 (2020).

Zhang, W., Zhang, Y., Qiu, H., Guo, Y., Wan, H., Zhang, X., Scossa, F., Alseekh, S., Zhang, Q., Wang, P., Xu, L., Schmidt, M. H.-W., Jia, X., Li, D., Zhu, A., Guo, F., Chen, W., Ni, D., Usadel, B., Fernie, A. R. & Wen, W. Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11, (2020).

Li, K., Wen, W., Alseekh, S., Yang, X., Guo, H., Li, W., Wang, L., Pan, Q., Zhan, W., Liu, J., Li, Y., Wu, X., Brotman, Y., Willmitzer, L., Li, J., Fernie, A. R. & Yan, J. Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement. The Plant Journal 99, 216–230 (2019).

Liang, Y., Kong, F., Torres-Romero, I., Burlacot, A., Cuine, S., Légeret, B., Billon, E., Brotman, Y., Alseekh, S., Fernie, A. R., Beisson, F., Peltier, G. & Li-Beisson, Y. Branched-Chain Amino Acid Catabolism Impacts Triacylglycerol Homeostasis in Chlamydomonas reinhardtii. Plant Physiology 179, 1502–1514 (2019).