Publications of D. Walther

Pant, B. D., Musialak-Lange, M., Nuc, P., May, P., Buhtz, A., Kehr, J., Walther, D. & Scheible, W.-R. Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 150, 1541–1555 (2009).

Durek, P. & Walther, D. The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, 100 (2008).

Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. & Schulze, W. X. PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36, D1015–D1021 (2008).

Koehl, K. I., Basler, G., Lüdemann, A., Selbig, J. & Walther, D. A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, 11 (2008).

Lohse, M., Krueger, P., Hannemann, J., Nagel, A., Stitt, M., Walther, D. & Usadel, B. Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, 16–17 (2008).

May, P., Wienkoop, S., Kempa, S., Usadel, B., Christian, N., Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhoeh, O., Weckwerth, W. & Walther, D. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179, 157–166 (2008).

Hummel, J., Niemann, M., Wienkoop, S., Schulze, W., Steinhauser, D., Selbig, J., Walther, D. & Weckwerth, W. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, 216 (2007).

Stacklies, W., Redestig, H., Scholz, M., Walther, D. & Selbig, J. pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23, 1164–1167 (2007).

Walther, D., Brunnemann, R. & Selbig, J. The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana. PLoS Genetics 3, e11 (2007).

Deng, M. C., Eisen, H. J., Mehra, M. R., Billingham, M., Marboe, C. C., Berry, G., Kobashigawa, J., Johnson, F. L., Starling, R. C., Murali, S., Pauly, D. F., Baron, H., Wohlgemuth, J. G., Woodward, R. N., Klingler, T. M., Walther, D., Lal, P. G., Rosenberg, S. & Hunt, S. Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling. American Journal of Transplantation 6, 150–160 (2006).

Mehra, M. R., Uber, P. A., Walther, D., Vesely, M., Wohlgemuth, J. G., Prentice, J., Tayama, D. & Billingham, M. Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation more than a hemodynamic marker. Circulation 114, I21–I26 (2006).

Jin, P., Walther, D., Zhang, J., Rowe-Teeter, C. & Fu, G. K. Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABA(A)) receptor gamma 2 subunit, mediates subunit interaction and cell surface localization. Journal of Biological Chemistry 279, 14179–14183 (2004).

Gabdoulline, R. R., Wade, R. C. & Walther, D. MolSurfer: a macromolecular interface navigator. Nucleic Acids Research 31, 3349–3351 (2003).

Meyer, A. S., Gillespie, J. R., Walther, D., Millet, I. S., Doniach, S. & Frydman, J. Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell 113, 369–381 (2003).

Walther, D. in Cell-Wide Identification of Metabolite-Protein Interactions (ed. Walker, J. M.) (2023). doi:10.1007/978-1-0716-2624-5_12

Walther, D. in The analysis of cis-elements: Current developments, knowledge and applications to gene networking (eds. Berendzen, K. & Wanke, D.) 176–188 (Bentham Books, 2013). doi: 10.2174/9781608054923113010012

Hummel, J., Strehmel, N., Boelling, C., Schmidt, S., Walther, D. & Kopka, J. in The Handbook of Plant Metabolomics (ed. Weckwerth, W.) 321–343 (2012). at <http://hdl.handle.net/11858/00-001M-0000-0014-1F82-E>

Schudoma, C., Steinfath, M., Sprenger, H., van Dongen, J., Hincha, D. K., Zuther, E., Geigenberger, P., Kopka, J., Koehl, K. I. & Walther, D. in High Throughput Phenotyping in Plants (ed. Normanly, J.) (Humana Press Inc., 2012). at <http://hdl.handle.net/11858/00-001M-0000-0014-1EB6-2>

Kopka, J., Walther, D., Allwood, J. W. & Goodacre, R. in The biology of plant metabolomics (ed. Hall, R. D.) 317–342 (Blackwell-Wiley, 2011). doi:10.1002/9781444339956.ch10

May, P., Christian, N., Ebenhoeh, O., Weckwerth, W. & Walther, D. in Bioinformatics for Comparative Proteomics (eds. Wu, C. H. & Chen, C.) 341–363 (Humana Press Inc., 2011). doi:10.1007/978-1-60761-977-2_21