Publications of Z. Nikoloski

de Abreu e Lima, F., Li, K., Wen, W., Yan, J., Nikoloski, Z., Willmitzer, L. & Brotman, Y. Unraveling lipid metabolism in maize with time-resolved multi-omics data. The Plant Journal 93, 1102–1115 (2018).

de Abreu e Lima, F., Willmitzer, L. & Nikoloski, Z. Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots. PLoS One 13, (2018).

Hansen, B. O., Meyer, E. H., Ferrari, C., Vaid, N., Movahedi, S., Vandepoele, K., Nikoloski, Z. & Mutwil, M. Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217, 1521–1534 (2018).

Küken, A., Sommer, F., Yaneva-Roder, L., Mackinder, L. C. M., Höhne, M., Geimer, S., Jonikas, M. C., Schroda, M., Stitt, M., Nikoloski, Z. & Mettler, T. Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, (2018).

Scheunemann, M., Brady, S. M. & Nikoloski, Z. Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models. Scientific Reports 8, (2018).

Vallarino, J. G., de Abreu e Lima, F., Soria, C., Tong, H., Pott, D. M., Willmitzer, L., Fernie, A. R., Nikoloski, Z. & Osorio, S. Genetic diversity of strawberry germplasm using metabolomic biomarkers. Scientific Reports 8, (2018).

Wu, S., Tohge, T., Cuadros-Inostroza, A. C., Tong, H., Tenenboim, H., Kooke, R., Méret, M., Keurentjes, J. B., Nikoloski, Z., Fernie, A. R., Willmitzer, L. & Brotman, Y. Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions. Molecular Plant 11, 118–134 (2018).

Alseekh, S., Tong, H., Scossa, F., Brotman, Y., Vigroux, F., Tohge, T., Ofner, I., Zamir, D., Nikoloski, Z. & Fernie, A. R. Canalization of Tomato Fruit Metabolism. Plant Cell 29, 2753–2765 (2017).

Annunziata, M. G., Apelt, F., Carillo, P., Krause, U., Feil, R., Mengin, V., Lauxmann, M., Koehl, K. I., Nikoloski, Z., Stitt, M., Lunn, J. E. & Raines, C. Getting back to nature: a reality check for experiments in controlled environments. Journal of Experimental Botany 68, 4463–4477 (2017).

Apelt, F., Breuer, D., Olas, J. J., Annunziata, M. G., Flis, A., Nikoloski, Z., Kragler, F. & Stitt, M. Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement. Plant Physiology 174, 1949–1968 (2017).

Breuer, D., Nowak, J., Ivako, A., Somssich, M., Persson, S. & Nikoloski, Z. System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells. Proceedings of the National Academy of Sciences of the United States of America 114, E5741–E5749 (2017).

de Abreu e Lima, F., Westhues, M., Cuadros-Inostroza, Á., Willmitzer, L., Melchinger, A. E. & Nikoloski, Z. Metabolic robustness in young roots underpins a predictive model of maize hybrid performance in the field. The Plant Journal 90, 319–329 (2017).

Estevez, S. R. & Nikoloski, Z. On the effects of alternative optima in context-specific metabolic model predictions. PLoS Computational Biology 13, (2017).

Gago, J., Fernie, A. R., Nikoloski, Z., Tohge, T., Martorell, S., Mariano Escalona, J., Ribas-Carbo, M., Flexas, J. & Medrano, H. Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard. Plant Methods 13, (2017).

Robaina-Estévez, S. R., Daloso, D. M., Zhang, Y. J., Fernie, A. R. & Nikoloski, Z. Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, (2017).

Ruprecht, C., Lohaus, R., Vanneste, K., Mutwil, M., Nikoloski, Z., Van de Peer, Y. & Persson, S. Revisiting ancestral polyploidy in plants. Science Advances 3, (2017).

Schwahn, K., Beleggia, R., Omranian, N. & Nikoloski, Z. Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data. Frontiers in Plant Science 8, (2017).

Swiadek, M., Proost, S., Sieh, D., Yu, J., Todesco, M., Jorzig, C., Cubillos, A., Plötner, B., Nikoloski, Z., Chae, E., Giavalisco, P., Fischer, A., Schröder, F., Kim, S.-T., Weigel, D. & Laitinen, R. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213, 900–915 (2017).

Westhues, M., Schrag, T. A., Heuer, C., Thaller, G., Utz, H. F., Schipprack, W., Thiemann, A., Seifert, F., Ehret, A., Schlereth, A., Stitt, M., Nikoloski, Z., Willmitzer, L., Schoen, C. C., Scholten, S. & Melchinger, A. E. Omics-based hybrid prediction in maize. Theoretical and Applied Genetics 130, 1927–1939 (2017).

Zhang, Y. J., Beard, K. F. M., Swart, C., Bergmann, S., Krahnert, I., Nikoloski, Z., Graf, A., Ratcliffe, R. G., Sweetlove, L. J., Fernie, A. R. & Obata, T. Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nature Communications 8, (2017).