Publications of S. Alseekh

Sun, Y., Alseekh, S. & Fernie, A. R. Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29, 477–504 (2023).

Tiozon, R. J. N., Sreenivasulu, N., Alseekh, S., Sartagoda, K. J. D., Usadel, B. & Fernie, A. R. Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice. Communications Biology 6, (2023).

Zhu, F., Sun, Y., Jadhav, S. S., Cheng, Y., Alseekh, S. & Fernie, A. R. The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in Molecular Biology 2642, 129–150 (2023).

Ahouvi, Y., Haber, Z., Zach, Y. Y., Rosental, L., Toubiana, D., Sharma, D., Alseekh, S., Tajima, H., Fernie, A. R., Brotman, Y., Blumwald, E. & Sade, N. The Alteration Of Tomato CHLOROPLAST VESICULATION Positively Affects Whole-Plant Source–Sink Relations And Fruit Metabolism Under Stress Conditions. Plant and Cell Physiology 63, 2008–2026 (2022).

Apriyanto, A., Compart, J., Zimmermann, V., Alseekh, S., Fernie, A. R. & Fettke, J. Indication that starch and sucrose are biomarkers for oil yield in oil palm (Elaeis guineensis Jacq.). FOOD CHEMISTRY 393, (2022).

Balparda, M., Schmitz, J., Duemmel, M., Wuthenow, I. C., Schmidt, M., Alseekh, S., Fernie, A. R., Lercher, M. J. & Maurino, V. G. Viridiplantae-specific GLXI and GLXII isoforms co-evolved and detoxify glucosone in planta. Plant Physiology 191, 1214–1233 (2022).

Mehring, A., Zayed, A., Salem, M. A., Alseekh, S., Fernie, A. & Ulber, R. Time-dependent behaviour of methyl jasmonate elicited cell suspension cultures of Ocimum species via untargeted mass spectrometry-based metabolomics. Industrial Crops and Products 187, (2022).

Sayed, S. M. A., Alseekh, S., Siems, K., Fernie, A. R., Luyten, W., Schmitz-Linneweber, C. & Saul, N. Identification of a Hydroxygallic Acid Derivative, Zingibroside R1 and a Sterol Lipid as Potential Active Ingredients of Cuscuta chinensis Extract That Has Neuroprotective and Antioxidant Effects in Aged Caenorhabditis elegans. Nutrients 14, (2022).

Zhu, F., Jadhav, S. S., Tohge, T., Salem, M. A., Li, J. M., Giovannoni, J. J., Cheng, Y., Alseekh, S. & Fernie, A. R. A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190, 250–266 (2022).

Zhang, J., Chi, X., Zhong, J., Fernie, A. R., Alseekh, S., Huang, L. & Qian, D. Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes. Frontiers in Plant Science 13, (2022).

Ishihara, H., Alseekh, S., Feil, R., Perera, P., George, G. M., Niedzwiecki, P., Arrivault, S., Zeeman, S. C., Fernie, A. R., Lunn, J. E., Smith, A. M. & Stitt, M. Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189, 1976–2000 (2022).

Martinez Rivas, F. J., Blanco-Portales, R., Molina-Hidalgo, F. J., Caballero, J. L., de Souza, L. P., Alseekh, S., Fernie, A. R., Munoz-Blanco, J. & Rodriguez-Franco, A. Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22, (2022).

Martinez Rivas, F. J., Blanco-Portales, R., Moyano, E., Alseekh, S., Caballero, J. L., Schwab, W., Fernie, A. R., Muñoz-Blanco, J. & Molina-Hidalgo, F. J. Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, (2022).

Sageman-Furnas, K., Nurmi, M., Contag, M., Plötner, B., Alseekh, S., Wiszniewski, A. A. G., Fernie, A. R., Smith, L. M. & Laitinen, R. A. E. A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63, 944–954 (2022).

Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A. R., Murphy, K. M., Schmöckel, S. M., Tester, M., Mueller-Roeber, B., Skirycz, A. & Balazadeh, S. The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9, (2022).

Salem, M. A., El-Shiekh, R. A., Fernie, A. R., Alseekh, S. & Zayed, A. Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12, (2022).

Yokoyama, R., de Oliveira, M. V. V., Takeda-Kimura, Y., Ishihara, H., Alseekh, S., Arrivault, S., Kukshal, V., Jez, J. M., Stitt, M., Fernie, A. R. & Maeda, H. A. Point mutations that boost aromatic amino acid production and CO2 assimilation in plants. Science Advances 8, (2022).

Alseekh, S., Zhu, F., Vallarino, J. G., Sokolowska, E., Yoshida, T., Bergmann, S., Wendenburg, R., Bolze, A., Skirycz, A., Avin-Wittenberg, T. & Fernie, A. R. Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, (2022).

Powell, A. F., Feder, A., Li, J., Schmidt, M. H.-W., Courtney, L., Alseekh, S., Jobson, E. M., Vogel, A., Xu, Y., Lyon, D., Dumschott, K., McHale, M., Sulpice, R., Bao, K., Lal, R., Duhan, A., Hallab, A., Denton, A. K., Bolger, M. E., Fernie, A. R., Hind, S. R., Mueller, L. A., Martin, G. B., Fei, Z., Martin, C., Giovannoni, J. J., Strickler, S. R. & Usadel, B. A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant Journal 110, 1791–1810 (2022).

Zhu, F., Wijesingha Ahchige, M., Brotman, Y., Alseekh, S., Zsögön, A. & Fernie, A. R. Bringing more players into play: Leveraging stress in genome wide association studies. Journal of Plant Physiology 271, (2022).