Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Review Article (150)

1251.

Review Article

Goldy, C.; Svetaz, L. A.; Bustamante, C. A.; Allegrini, M.; Valentini, G. H.; Drincovich, M. F.; Fernie, A. R.; Lara, M. V.: Comparative proteomic and metabolomic studies between Prunus persica genotypes resistant and susceptible to Taphrina deformans suggest a molecular basis of resistance. Plant Physiology and Biochemistry 118, pp. 245 - 255 (2017)

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1252.

Review Article

Timm, S.; Florian, A.; Fernie, A. R.; Bauwe, H.: The regulatory interplay between photorespiration and photosynthesis. Journal of Experimental Botany 67 (10-SI), pp. 2923 - 2929 (2016)

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1253.

Review Article

Daloso, D. M.; dos Anjos, L.; Fernie, A. R.: Roles of sucrose in guard cell regulation. New Phytologist 211 (3), pp. 809 - 818 (2016)

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1254.

Review Article

Liu, Z.; Schneider, R.; Kesten, C.; Zhang, Y.; Somssich, M.; Zhang, Y.; Fernie, A. R.; Persson, S.: Cellulose-Microtubule Uncoupling Proteins Prevent Lateral Displacement of Microtubules during Cellulose Synthesis in Arabidopsis. Developmental Cell 38 (3), pp. 305 - 315 (2016)

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1255.

Review Article

Silva, W. B.; Daloso, D. M.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W. L.: Can stable isotope mass spectrometry replace radiolabelled approaches in metabolic studies? Plant Science 249, pp. 59 - 69 (2016)

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1256.

Review Article

Fettke, J.; Fernie, A. R.: Intracellular and cell-to-apoplast compartmentation of carbohydrate metabolism. Trends in Plant Science 20 (8), pp. 490 - 497 (2015)

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1257.

Review Article

Gerlach, N.; Schmitz, J.; Polatajko, A.; Schlueter, U.; Fahnenstich, H.; Witt, S.; Fernie, A. R.; Uroic, K.; Scholz, U.; Sonnewald, U. et al.; Bucher, M.: An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis. Plant, Cell and Environment 38 (8), pp. 1591 - 1612 (2015)

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1258.

Review Article

Medeiros, D. B.; Daloso, D. M.; Fernie, A. R.; Nikoloski, Z.; Araujo, W. L.: Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 38 (8), pp. 1457 - 1470 (2015)

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1259.

Review Article

Tohge, T.; Fernie, A. R.: Metabolomics-Inspired Insight into Developmental, Environmental and Genetic Aspects of Tomato Fruit Chemical Composition and Quality. Plant & cell physiology 56 (9), pp. 1681 - 1896 (2015)

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1260.

Review Article

Tohge, T.; Alseekh, S.; Fernie, A. R.: On the regulation and function of secondary metabolism during fruit development and ripening. Journal of Experimental Botany 65 (16), pp. 4599 - 4611 (2014)

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1261.

Review Article

Nunes-Nesi, A.; Brito, D. S.; Inostroza-Blancheteau, C.; Fernie, A. R.; Araujo, W. L.: The complex role of mitochondrial metabolism in plant aluminum resistance. Trends in Plant Science 19 (6), pp. 399 - 407 (2014)

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1262.

Review Article

Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: On the role of plant mitochondrial metabolism and its impact on photosynthesis in both optimal and sub-optimal growth conditions. Photosynthesis research 119 (1-2), pp. 141 - 156 (2014)

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1263.

Review Article

Araujo, W. L.; Martins, A. O.; Fernie, A. R.; Tohge, T.: 2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis. Frontiers in Plant Science 5, p. 552 - 552 (2014)

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1264.

Review Article

Galili, G.; Avin-Wittenberg, T.; Angelovici, R.; Fernie, A. R.: The role of photosynthesis and amino acid metabolism in the energy status during seed development. Frontiers in Plant Science 5, 447 (2014)

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1265.

Review Article

Gechev, T. G.; Hille, J.; Woerdenbag, H. J.; Benina, M.; Mehterov, N.; Toneva, V.; Fernie, A. R.; Mueller-Roeber, B.: Natural products from resurrection plants: Potential for medical applications. Biotechnology Advances 32 (6), pp. 1091 - 1101 (2014)

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1266.

Review Article

Geigenberger, P.; Fernie, A. R.: Metabolic Control of Redox and Redox Control of Metabolism in Plants. Antioxidants Redox Signaling 21 (9), pp. 1389 - 1421 (2014)

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1267.

Review Article

Osorio, S.; Ruan, Y.-L.; Fernie, A. R.: An update on source-to-sink carbon partitioning in tomato. Frontiers in Plant Science 5, p. 516 - 516 (2014)

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1268.

Review Article

Tohge, T.; Fernie, A. R.: Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions. Frontiers in Plant Science 5, 75 (2014)

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1269.

Review Article

Sweetlove, L. J.; Obata, T.; Fernie, A. R.: Systems analysis of metabolic phenotypes – what have we learnt? Trends in Plant Science 19 (4), pp. 222 - 230 (2013)

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1270.

Review Article

Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. Plant Biology 15 (4), pp. 748 - 753 (2013)

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1271.

Review Article

Florian, A.; Araujo, W. L.; Fernie, A. R.: New insights into photorespiration obtained from metabolomics. Plant Biology 15 (4), pp. 656 - 666 (2013)

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1272.

Review Article

Hagemann, M.; Fernie, A. R.; Espie, G. S.; Kern, R.; Eisenhut, M.; Reumann, S.; Bauwe, H.; Weber, A. P.: Evolution of the biochemistry of the photorespiratory C2 cycle. Plant Biology 15 (4), pp. 639 - 647 (2013)

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1273.

Review Article

Obata, T.; Fernie, A.; Nunes-Nesi, A.: The Central Carbon and Energy Metabolism of Marine Diatoms. Metabolites 3 (2), pp. 325 - 346 (2013)

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1274.

Review Article

Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: The evolution of phenylpropanoid metabolism in the green lineage. Critical Reviews in Biochemistry and Molecular Biology 48 (2), pp. 123 - 152 (2013)

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1275.

Review Article

Toubiana, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Network analysis: tackling complex data to study plant metabolism. Trends in Biotechnology 31 (1), pp. 29 - 36 (2013)

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1276.

Review Article

Fernie, A. R.: Grand Challenges in Plant Systems Biology: Closing the Circle(s). Frontiers in Plant Science 3, p. 35 (2012)

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1277.

Review Article

Fernie, A. R.; Obata, T.; Allen, A. E.; Araujo, W. L.; Bowler, C.: Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends in Plant Science 17 (7), pp. 395 - 403 (2012)

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1278.

Review Article

Fitzpatrick, T. B.; Basset, G. J.; Borel, P.; Carrari, F.; DellaPenna, D.; Fraser, P. D.; Hellmann, H.; Osorio, S.; Rothan, C.; Valpuesta, V. et al.; Caris-Veyrat, C.; Fernie, A. R.: Vitamin deficiencies in humans: can plant science help? The Plant Cell 24 (2), pp. 395 - 414 (2012)

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1279.

Review Article

Kirma, M.; Araujo, W. L.; Fernie, A. R.; Galili, G.: The multifaceted role of aspartate-family amino acids in plant metabolism. Journal of Experimental Botany 63 (14), pp. 4995 - 5001 (2012)

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1280.

Review Article

Obata, T.; Fernie, A. R.: The use of metabolomics to dissect plant responses to abiotic stresses. Cellular and Molecular Life Sciences 69 (19), pp. 3225 - 3243 (2012)

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1281.

Review Article

Ruan, Y. L.; Patrick, J. W.; Bouzayen, M.; Osorio, S.; Fernie, A. R.: Molecular regulation of seed and fruit set. Trends in Plant Science 17 (11), pp. 656 - 665 (2012)

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1282.

Review Article

Araujo, W. L.; Fernie, A. R.; Nunes-Nesi, A.: Control of stomatal aperture: A renaissance of the old guard. Plant Signaling & Behavior 6 (9), pp. 1305 - 1311 (2011)

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1283.

Review Article

Araujo, W. L.; Tohge, T.; Ishizaki, K.; Leaver, C. J.; Fernie, A. R.: Protein degradation - an alternative respiratory substrate for stressed plants. Trends in Plant Science 16 (9), pp. 489 - 498 (2011)

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1284.

Review Article

Fernie, A. R.; Klee, H. J.: The use of natural genetic diversity in the understanding of metabolic organization and regulation. Frontiers in Plant Science 2, p. 59 (2011)

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1285.

Review Article

Gupta, K. J.; Fernie, A. R.; Kaiser, W. M.; van Dongen, J. T.: On the origins of nitric oxide. Trends in Plant Science 16 (3), pp. 160 - 168 (2011)

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1286.

Review Article

Haferkamp, I.; Fernie, A. R.; Neuhaus, H. E.: Adenine nucleotide transport in plants: much more than a mitochondrial issue. Trends in Plant Science 16 (9), pp. 507 - 515 (2011)

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1287.

Review Article

Palmieri, F.; Pierri, C. L.; De Grassi, A.; Nunes-Nesi, A.; Fernie, A. R.: Evolution, structure and function of mitochondrial carriers: a review with new insights. The Plant Journal 66 (1), pp. 161 - 181 (2011)

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1288.

Review Article

Tohge, T.; Kusano, M.; Fukushima, A.; Saito, K.; Fernie, A. R.: Transcriptional and metabolic programs following exposure of plants to UV-B irradiation. Plant Signaling & Behavior 6 (12), pp. 1987 - 1992 (2011)

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1289.

Review Article

van Dongen, J. T.; Gupta, K. J.; Ramirez-Aguilar, S. J.; Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: Regulation of respiration in plants: A role for alternative metabolic pathways. Journal of Plant Physiology 168 (12), pp. 1434 - 1443 (2011)

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1290.

Review Article

Angelovici, R.; Galili, G.; Fernie, A. R.; Fait, A.: Seed desiccation: a bridge between maturation and germination. Trends in Plant Science 15 (4), pp. 211 - 218 (2010)

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1291.

Review Article

Bauwe, H.; Hagemann, M.; Fernie, A. R.: Photorespiration: players, partners and origin. Trends in Plant Science 15 (6), pp. 330 - 336 (2010)

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1292.

Review Article

Geigenberger, P.; Riewe, D.; Fernie, A. R.: The central regulation of plant physiology by adenylates. Trends in Plant Science 15 (2), pp. 98 - 105 (2010)

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1293.

Review Article

Meyer, S.; De Angeli, A.; Fernie, A. R.; Martinoia, E.: Intra- and extra-cellular excretion of carboxylates. Trends in Plant Science 15 (1), pp. 40 - 47 (2010)

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1294.

Review Article

Nunes-Nesi, A.; Fernie, A. R.; Stitt, M.: Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions. Molecular Plant 3 (6), pp. 973 - 996 (2010)

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1295.

Review Article

Sweetlove, L. J.; Beard, K. F. M.; Nunes-Nesi, A.; Fernie, A. R.; Ratcliffe, R. G.: Not just a circle: flux modes in the plant TCA cycle. Trends in Plant Science 15 (8), pp. 462 - 470 (2010)

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1296.

Review Article

Bunik, V. I.; Fernie, A. R.: Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation. Biochemical Journal 422 (3), pp. 405 - 421 (2009)

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1297.

Review Article

Depuydt, S.; Trenkamp, S.; Fernie, A. R.; Elftieh, S.; Renou, J. P.; Vuylsteke, M.; Holsters, M.; Vereecke, D.: An Integrated Genomics Approach to Define Niche Establishment by Rhodococcus fascians. Plant Physiology 149 (3), pp. 1366 - 1386 (2009)

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1298.

Review Article

Fernie, A. R.; Schauer, N.: Metabolomics-assisted breeding: a viable option for crop improvement? Trends in Genetics 25 (1), pp. 39 - 48 (2009)

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1299.

Review Article

Rasmusson, A. G.; Fernie, A. R.; van Dongen, J. T.: Alternative oxidase: a defence against metabolic fluctuations? Physiologia Plantarum 137 (4), pp. 371 - 382 (2009)

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1300.

Review Article

Tohge, T.; Fernie, A. R.: Web-based resources for mass-spectrometry-based metabolomics: A user's guide. Phytochemistry 70 (4), pp. 450 - 456 (2009)

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