Publications of F. Martinez-Seidel

Journal Article (17)

1.
Journal Article
Rosa-Téllez, S., Alcántara-Enguídanos, A., Martinez-Seidel, F., Casatejada-Anchel, R., Saeheng, S., Bailes, C. L., Erban, A., Medeiros, D. B., Alepúz, P., Matus, J. T., Kopka, J., Muñoz-Bertomeu, J., Krueger, S., Roje, S., Fernie, A. R. & Ros, R. The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 36, 404–426 (2024).
2.
Journal Article
Siodmak, A., Martinez-Seidel, F., Rayapuram, N., Bazin, J., Alhoraibi, H., Gentry-Torfer, D., Tabassum, N., Sheikh, A. H., Kise, J. K. G., Blilou, I., Crespi, M., Kopka, J. & Hirt, H. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51, 11876–11892 (2023).
3.
Journal Article
Figueroa, N. E., Franz, P., Luzarowski, M., Martinez-Seidel, F., Moreno, J. C., Childs, D., Ziemblicka, A., Sampathkumar, A., Andersen, T. G., Tsiavaliaris, G., Kosmacz, M. & Skirycz, A. Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115, 1214–1230 (2023).
4.
Journal Article
Awada, R., Lepelley, M., Breton, D., Charpagne, A., Campa, C., Berry, V., Georget, F., Breitler, J.-C., Léran, S., Djerrab, D., Martinez-Seidel, F., Descombes, P., Crouzillat, D., Bertrand, B. & Etienne, H. Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica. BMC Genomics 24, (2023).
5.
Journal Article
Brigante, F. I., Lucini Mas, A., Erban, A., Fehrle, I., Martinez-Seidel, F., Kopka, J., Wunderlin, D. A. & Baroni, M. V. Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, (2022).
6.
Journal Article
Cheong, B. E., Yu, D., Martinez-Seidel, F., Ho, W. W. H., Rupasinghe, T. W. T., Dolferus, R. & Roessner, U. The Effect of Cold Stress on the Root-Specific Lipidome of Two Wheat Varieties with Contrasting Cold Tolerance. Plants 11, (2022).
7.
Journal Article
Martinez-Seidel, F., Hsieh, Y.-C., Walther, D., Kopka, J. & Firmino, A. A. P. COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, (2021).
8.
Journal Article
Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).
9.
Journal Article
Londoño-Giraldo, L. M., Baena-Pedroza, A. M., Martinez-Seidel, F., Corpas-Iguar, E. & Taborda-Ocampo, G. Gone wild: Integration of antioxidative, physicochemical, volatilomic and sensorial profiles ratify rustic relatives of cherry tomato as ideal mating partners. Scientia Horticulturae 277, (2021).
10.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).
11.
Journal Article
Martinez-Seidel, F., Suwanchaikasem, P., Nie, S., Leeming, M. G., Firmino, A. A. P., Williamson, N. A., Kopka, J., Roessner, U. & Boughton, B. A. Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, (2021).
12.
Journal Article
Melo, T. O., Franciscon, L., Brown, G., Kopka, J., Cunha, L., Martinez-Seidel, F., Madureira, L. A. D. S. & Hansel, F. A. Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, (2021).
13.
Journal Article
Schillaci, M., Kehelpannala, C., Martinez-Seidel, F., Smith, P. M. C., Arsova, B., Watt, M. & Roessner, U. The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status. Metabolites 11, (2021).
14.
Journal Article
Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).
15.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C. & Kopka, J. Systematic review of plant ribosome heterogeneity and specialization. Frontiers in Plant Science 11, (2020).
16.
Journal Article
Awada, R., Campa, C., Gibault, E., Dechamp, E., Georget, F., Lepelley, M., Abdallah, C., Erban, A., Martinez-Seidel, F., Kopka, J., Legendre, L., Leran, S., Conejero, G., Verdeil, J.-L., Crouzillat, D., Breton, D., Bertrand, B. & Etienne, H. Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 20, (2019).
17.
Journal Article
Erban, A., Fehrle, I., Martinez-Seidel, F., Brigante, F., Más, A. L., Baroni, V., Wunderlin, D. & Kopka, J. Discovery of food identity markers by metabolomics and machine learning technology. Scientific Reports 9, (2019).

Book Chapter (1)

18.
Book Chapter
Erban, A., Martinez-Seidel, F., Rajarathinam, Y., Dethloff, F., Orf, I., Fehrle, I., Alpers, J., Beine-Golovchuk, O. & Kopka, J. in Plant Cold Acclimation: Methods in molecular biology (eds. Hincha, D. K. & Zuther, E.) 2156, 203–239 (2020).
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