Publications of T. Tohge

Araujo, W. L., Ishizaki, K., Nunes-Nesi, A., Tohge, T., Larson, T. R., Krahnert, I., Balbo, I., Witt, S., Doermann, P., Graham, I. A., Leaver, C. J. & Fernie, A. R. Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence. Plant Physiology 157, 55–69 (2011).

Araujo, W. L., Nunes-Nesi, A., Osorio, S., Usadel, B., Fuentes, D., Nagy, R., Balbo, I., Lehmann, M., Studart-Witkowski, C., Tohge, T., Martinoia, E., Jordana, X., DaMatta, F. M. & Fernie, A. R. Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23, 600–627 (2011).

Bazzini, A. A., Manacorda, C. A., Tohge, T., Conti, G., Rodriguez, M. C., Nunes-Nesi, A., Villanueva, S., Fernie, A. R., Carrari, F. & Asurmendi, S. Metabolic and miRNA Profiling of TMV Infected Plants Reveals Biphasic Temporal Changes. PLoS One 6, e28466 (2011).

Dal Cin, V., Tieman, D. M., Tohge, T., McQuinn, R., de Vos, R. C. H., Osorio, S., Schmelz, E. A., Taylor, M. G., Smits-Kroon, M. T., Schuurink, R. C., Haring, M. A., Giovannoni, J., Fernie, A. R. & Klee, H. J. Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopic Expression of a MYB Transcription Factor in Tomato Fruit. The Plant Cell 23, 2738–2753 (2011).

Djamei, A., Schipper, K., Rabe, F., Ghosh, A., Vincon, V., Kahnt, J., Osorio, S., Tohge, T., Fernie, A. R., Feussner, I., Feussner, K., Meinicke, P., Stierhof, Y. D., Schwarz, H., Macek, B., Mann, M. & Kahmann, R. Metabolic priming by a secreted fungal effector. Nature 478, 395–398 (2011).

Kusano, M., Tohge, T., Fukushima, A., Kobayashi, M., Hayashi, N., Otsuki, H., Kondou, Y., Goto, H., Kawashima, M., Matsuda, F., Niida, R., Matsui, M., Saito, K. & Fernie, A. R. Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. The Plant Journal 67, 354–369 (2011).

Lytovchenko, A., Eickmeier, I., Pons, C., Osorio, S., Szecowka, M., Lehmberg, K., Arrivault, S., Tohge, T., Pineda, B., Anton, M. T., Hedtke, B., Lu, Y., Fisahn, J., Bock, R., Stitt, M., Grimm, B., Granell, A. & Fernie, A. R. Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiology 157, 1650–1663 (2011).

Matas, A. J., Yeats, T. H., Buda, G. J., Zheng, Y., Chatterjee, S., Tohge, T., Ponnala, L., Adato, A., Aharoni, A., Stark, R., Fernie, A. R., Fei, Z., Giovannoni, J. J. & Rose, J. K. C. Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation. The Plant Cell 23, 3893–3910 (2011).

Mutwil, M., Klie, S., Tohge, T., Giorgi, F. M., Wilkins, O., Campbell, M. M., Fernie, A. R., Usadel, B., Nikoloski, Z. & Persson, S. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23, 895–910 (2011).

Osorio, S., Alba, R., Damasceno, C. M. B., Lopez-Casado, G., Lohse, M., Zanor, M. I., Tohge, T., Usadel, B., Rose, J. K. C., Fei, Z. J., Giovannoni, J. J. & Fernie, A. R. Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157, 405–425 (2011).

Rohrmann, J., Tohge, T., Alba, R., Osorio, S., Caldana, C., McQuinn, R., Arvidsson, S., van der Merwe, M. J., Riano-Pachon, D. M., Mueller-Roeber, B., Fei, Z., Nunes-Nesi, A., Giovannoni, J. J. & Fernie, A. R. Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68, 999–1013 (2011).

Tohge, T., Mettler, T., Arrivault, S., Carroll, A. J., Stitt, M. & Fernie, A. R. From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, 61 (2011).

Tohge, T., Ramos, M. S., Nunes-Nesi, A., Mutwil, M., Giavalisco, P., Steinhauser, D., Schellenberg, M., Willmitzer, L., Persson, S., Martinoia, E. & Fernie, A. R. Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157, 1469–1482 (2011).

Araujo, W. L., Ishizaki, K., Nunes-Nesi, A., Larson, T. R., Tohge, T., Krahnert, I., Witt, S., Obata, T., Schauer, N., Graham, I. A., Leaver, C. J. & Fernie, A. R. Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria. The Plant Cell 22, 1549–1563 (2010).

Huang, T. F., Tohge, T., Lytovchenko, A., Fernie, A. R. & Jander, G. Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana. The Plant Journal 63, 823–835 (2010).

Maloney, G. S., Kochevenko, A., Tieman, D. M., Tohge, T., Krieger, U., Zamir, D., Taylor, M. G., Fernie, A. R. & Klee, H. J. Characterization of the Branched-Chain Amino Acid Aminotransferase Enzyme Family in Tomato. Plant Physiology 153, 925–936 (2010).

Stracke, R., Jahns, O., Keck, M., Tohge, T., Niehaus, K., Fernie, A. R. & Weisshaar, B. Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12-and MYB111-independent flavonol glycoside accumulation. New Phytologist 188, 985–1000 (2010).

Tohge, T. & Fernie, A. R. Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nature Protocols 5, 1210–1227 (2010).

Lehmann, M., Schwarzlander, M., Obata, T., Sirikantaramas, S., Burow, M., Olsen, C. E., Tohge, T., Fricker, M. D., Moller, B. L., Fernie, A. R., Sweetlove, L. J. & Laxa, M. The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2, 390–406 (2009).

Osorio, S., Tohge, T. & Fernie, A. R. Application of metabolomic profiling for identififying valuable traits in tomato. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 4, 1–9 (2009).