Publications of Z. Nikoloski

Apelt, F., Breuer, D., Nikoloski, Z., Stitt, M. & Kragler, F. Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82, 693–706 (2015).

Arnold, A., Sajitz-Hermstein, M. & Nikoloski, Z. Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10, (2015).

Breuer, D. & Nikoloski, Z. DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, (2015).

Estevez, S. R. & Nikoloski, Z. Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization. PLoS One 10, (2015).

Heise, R., Fernie, A. R., Stitt, M. & Nikoloski, Z. Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana. Frontiers in Plant Science 6, (2015).

Nikoloski, Z., Perez-Storey, R. & Sweetlove, L. J. Inference and Prediction of Metabolic Network Fluxes. Plant Physiology 169, 1443–1455 (2015).

Omranian, N., Kleessen, S., Tohge, T., Klie, S., Basler, G., Mueller-Roeber, B., Fernie, A. R. & Nikoloski, Z. Differential metabolic and coexpression networks of plant metabolism. Trends in Plant Science 20, 266–268 (2015).

Omranian, N., Mueller-Roeber, B. & Nikoloski, Z. Segmentation of biological multivariate time-series data. Scientific Reports 5, 8937–8937 (2015).

Toubiana, D., Batushansky, A., Tzfadia, O., Scossa, F., Khan, A., Barak, S., Zamir, D., Fernie, A. R., Nikoloski, Z. & Fait, A. Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81, 121–133 (2015).

Weiwei, W., Li, K., Alseekh, S., Omranian, N., Zhao, L., Zhou, Y., Xiao, Y., Jin, M., Yang, N., Liu, H., Florian, A., Li, W., Pan, Q., Nikoloski, Z., Yan, J. & Fernie, A. R. Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27, 1839–1856 (2015).

Arnold, A. & Nikoloski, Z. Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. Plant Physiology 165, 1380–1391 (2014).

Sauvage, C., Segura, V., Bauchet, G., Stevens, R., Do, P. T., Nikoloski, Z., Fernie, A. R. & Causse, M. Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiology 165, 1120–1132 (2014).

Bellucci, E., Bitocchi, E., Ferrarini, A., Benazzo, A., Biagetti, E., Klie, S., Minio, A., Rau, D., Rodriguez, M., Panziera, A., Venturini, L., Attene, G., Albertini, E., Jackson, S. A., Nanni, L., Fernie, A. R., Nikoloski, Z., Bertorelle, G., Delledonne, M. & Papa, R. Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26, 1901–1912 (2014).

Kleessen, S., Laitinen, R., Fusari, C. M., Antonio, C., Sulpice, R., Fernie, A. R., Stitt, M. & Nikoloski, Z. Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, (2014).

Arnold, A. & Nikoloski, Z. In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, 171–194 (2014).

Feher, K., Lisec, J., Römisch-Margl, L., Selbig, J., Gierl, A., Piepho, H.-P., Nikoloski, Z. & Willmitzer, L. Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9, (2014).

Breuer, D., Ivakov, A., Sampathkumar, A., Hollandt, F., Persson, S. & Nikoloski, Z. Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11, (2014).

Breuer, D. & Nikoloski, Z. img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30, 3291–2 (2014).

Florian, A., Nikoloski, Z., Sulpice, R., Timm, S., Araujo, W. L., Tohge, T., Bauwe, H. & Fernie, A. R. Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7, 893–911 (2014).

Florian, A., Timm, S., Nikoloski, Z., Tohge, T., Bauwe, H., Araujo, W. L. & Fernie, A. R. Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56, 941–959 (2014).