Publications of Z. Nikoloski

Eloundou-Mbebi, J. M. O., Küken, A., Omranian, N., Kleessen, S., Neigenfind, J., Basler, G. & Nikoloski, Z. A network property necessary for concentration robustness. Nature Communications 7, (2016).

Estevez, S. R. & Nikoloski, Z. Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize. Plant & Cell Physiology 57, 933–943 (2016).

Florez-Sarasa, I. D., Ribas-Carbo, M., Fernandez Del-Saz, N., Schwahn, K., Nikoloski, Z., Fernie, A. R. & Flexas, J. Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212, 66–79 (2016).

Liu, Z., Omranian, N., Neumetzler, L., Wang, T., Herter, T., Usadel, B., Demura, T., Giavalisco, P., Nikoloski, Z. & Persson, S. A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172, 1334–1351 (2016).

Orf, I., Timm, S., Bauwe, H., Fernie, A. R., Hagemann, M., Kopka, J. & Nikoloski, Z. Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles. Journal of Experimental Botany 67, 2941–2952 (2016).

Ruprecht, C., Mendrinna, A., Tohge, T., Sampathkumar, A., Klie, S., Fernie, A. R., Nikoloski, Z., Persson, S. & Mutwil, M. FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170, 1878–1894 (2016).

Sajitz-Hermstein, M. & Nikoloski, Z. Functional centrality as a predictor of shifts in metabolic flux states. BMC research notes 9, (2016).

Sajitz-Hermstein, M. & Nikoloski, Z. Multi-objective shadow prices point at principles of metabolic regulation. Biosystems [Elektronische Ressource]: Journal of Biological and Information Processing Sciences 146, 91–101 (2016).

Sajitz-Hermstein, M., Töpfer, N., Kleessen, S., Fernie, A. R. & Nikoloski, Z. iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models. Bioinformatics 32, i755–i762 (2016).

Schwahn, K., Küken, A., Kliebenstein, D. J., Fernie, A. R. & Nikoloski, Z. Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172, 1324–1333 (2016).

Scossa, F., Brotman, Y., de Abreu e Lima, F., Willmitzer, L., Nikoloski, Z., Tohge, T. & Fernie, A. R. Genomics-based strategies for the use of natural variation in the improvement of crop metabolism. Plant Science 242, 47–64 (2016).

Rosado-Souza, L., Scossa, F., Chaves, I. S., Kleessen, S., Salvador, L. F. D., Milagre, J. C., Finger, F., Bhering, L. L., Sulpice, R., Araujo, W. L., Nikoloski, Z., Fernie, A. R. & Nunes-Nesi, A. Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta 242, 677–691 (2015).

Cui, X., Lv, Y., Chen, M., Nikoloski, Z., Twell, D. & Zhang, D. Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome. Molecular Plant 8, 935–945 (2015).

Kleessen, S., Irgang, S., Klie, S., Giavalisco, P. & Nikoloski, Z. Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. The Plant Journal 81, 822–835 (2015).

Alseekh, S., Tohge, T., Wendenburg, R., Scossa, F., Omranian, N., Li, J., Kleessen, S., Giavalisco, P., Pleban, T., Mueller-Roeber, B., Zamir, D., Nikoloski, Z. & Fernie, A. R. Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27, 485–512 (2015).

Apelt, F., Breuer, D., Nikoloski, Z., Stitt, M. & Kragler, F. Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82, 693–706 (2015).

Arnold, A., Sajitz-Hermstein, M. & Nikoloski, Z. Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10, (2015).

Breuer, D. & Nikoloski, Z. DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, (2015).

Estevez, S. R. & Nikoloski, Z. Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization. PLoS One 10, (2015).

Heise, R., Fernie, A. R., Stitt, M. & Nikoloski, Z. Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana. Frontiers in Plant Science 6, (2015).