Publications of A. R. Fernie

Kochevenko, A. & Fernie, A. R. The genetic architecture of branched-chain amino acid accumulation in tomato fruits. Journal of Experimental Botany 62, 3895–3906 (2011).

Krueger, S., Giavalisco, P., Krall, L., Steinhauser, M.-C., Buessis, D., Usadel, B., Fluegge, U.-I., Fernie, A. R., Willmitzer, L. & Steinhauser, D. A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6, e17806 (2011).

Kusano, M., Tohge, T., Fukushima, A., Kobayashi, M., Hayashi, N., Otsuki, H., Kondou, Y., Goto, H., Kawashima, M., Matsuda, F., Niida, R., Matsui, M., Saito, K. & Fernie, A. R. Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. The Plant Journal 67, 354–369 (2011).

Lombardo, V. A., Osorio, S., Borsani, J., Lauxmann, M. A., Bustamante, C. A., Budde, C. O., Andreo, C. S., Lara, M. V., Fernie, A. R. & Drincovich, M. F. Metabolic profiling during peach fruit development and ripening reveals the metabolic networks that underpin each developmental stage. Plant Physiology 157, 1696–1710 (2011).

Lytovchenko, A., Eickmeier, I., Pons, C., Osorio, S., Szecowka, M., Lehmberg, K., Arrivault, S., Tohge, T., Pineda, B., Anton, M. T., Hedtke, B., Lu, Y., Fisahn, J., Bock, R., Stitt, M., Grimm, B., Granell, A. & Fernie, A. R. Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiology 157, 1650–1663 (2011).

Matas, A. J., Yeats, T. H., Buda, G. J., Zheng, Y., Chatterjee, S., Tohge, T., Ponnala, L., Adato, A., Aharoni, A., Stark, R., Fernie, A. R., Fei, Z., Giovannoni, J. J. & Rose, J. K. C. Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation. The Plant Cell 23, 3893–3910 (2011).

Meitzel, T., Radchuk, R., Nunes-Nesi, A., Fernie, A. R., Link, W., Weschke, W. & Weber, H. Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development. Plant Journal 65, 517–531 (2011).

Michaeli, S., Fait, A., Lagor, K., Nunes-Nesi, A., Grillich, N., Yellin, A., Bar, D., Khan, M., Fernie, A. R., Turano, F. J. & Fromm, H. A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism. The Plant Journal 67, 485–498 (2011).

Mutwil, M., Klie, S., Tohge, T., Giorgi, F. M., Wilkins, O., Campbell, M. M., Fernie, A. R., Usadel, B., Nikoloski, Z. & Persson, S. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23, 895–910 (2011).

Nafati, M., Cheniclet, C., Hernould, M., Do, P. T., Fernie, A. R., Chevalier, C. & Gevaudant, F. The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth. The Plant Journal 65, 543–556 (2011).

Nunes-Nesi, A., Araujo, W. L. & Fernie, A. R. Targeting Mitochondrial Metabolism and Machinery as a Means to Enhance Photosynthesis. Plant Physiology 155, 101–107 (2011).

Obata, T., Matthes, A., Koszior, S., Lehmann, M., Araujo, W. L., Bock, R., Sweetlove, L. J. & Fernie, A. R. Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings. Phytochemistry 72, 1081–1091 (2011).

Osorio, S., Alba, R., Damasceno, C. M. B., Lopez-Casado, G., Lohse, M., Zanor, M. I., Tohge, T., Usadel, B., Rose, J. K. C., Fei, Z. J., Giovannoni, J. J. & Fernie, A. R. Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157, 405–425 (2011).

Osorio, S., Bombarely, A., Giavalisco, P., Usadel, B., Stephens, C., Araguez, I., Medina-Escobar, N., Botella, M. A., Fernie, A. R. & Valpuesta, V. Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62, 2855–2873 (2011).

Quadrana, L., Rodriguez, M. C., Lopez, M., Bermudez, L., Nunes-Nesi, A., Fernie, A. R., Descalzo, A., Asis, R., Rossi, M., Asurmendi, S. & Carrari, F. Coupling Virus-Induced Gene Silencing to Exogenous Green Fluorescence Protein Expression Provides a Highly Efficient System for Functional Genomics in Arabidopsis and across All Stages of Tomato Fruit Development. Plant Physiology 156, 1278–1291 (2011).

Rashke, M., Boycheva, S., Crèvecoeur, M., Nunes-Nesi, A., Witt, S., Fernie, A. R., Amrhein, N. & Fitzpatrick, T. B. Enhanced levels of vitamin B6 increase aerial organ size and positively affect stress tolerance in Arabidopsis. The Plant Journal 66, 414–432 (2011).

Reiland, S., Grossmann, J., Baerenfaller, K., Gehrig, P., Nunes-Nesi, A., Fernie, A. R., Gruissem, W. & Baginsky, S. Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.). Proteomics 11, 1751–1763 (2011).

Rohrmann, J., Tohge, T., Alba, R., Osorio, S., Caldana, C., McQuinn, R., Arvidsson, S., van der Merwe, M. J., Riano-Pachon, D. M., Mueller-Roeber, B., Fei, Z., Nunes-Nesi, A., Giovannoni, J. J. & Fernie, A. R. Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68, 999–1013 (2011).

Skirycz, A., Memmi, S., de Bodt, S., Maleux, K., Obata, T., Fernie, A. R., Devreese, B. & Inze, D. A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10, 1018–1029 (2011).

Steinbrenner, A. D., Gomez, S., Osorio, S., Fernie, A. R. & Orians, C. M. Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37, 1294–1303 (2011).