Publications of C. Caldana

Morales, S. G., Trejo-Tellez, L. I., Gomez Merino, F. C., Caldana, C., Espinosa-Victoria, D. & Herrera Cabrera, B. E. Growth, photosynthetic activity, and potassium and sodium concentration in rice plants under salt stress. ACTA SCIENTIARUM-AGRONOMY 34, 317–324 (2012).

Balazadeh, S., Kwasniewski, M., Caldana, C., Mehrnia, M., Zanor, M. I., Xue, G. P. & Mueller-Roeber, B. ORS1, an H(2)O(2)-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana. Molecular Plant 4, 346–360 (2011).

Caldana, C., Degenkolbe, T., Cuadros-Inostroza, A., Klie, S., Sulpice, R., Leisse, A., Steinhauser, D., Fernie, A. R., Willmitzer, L. & Hannah, M. A. High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67, 869–884 (2011).

Rohrmann, J., Tohge, T., Alba, R., Osorio, S., Caldana, C., McQuinn, R., Arvidsson, S., van der Merwe, M. J., Riano-Pachon, D. M., Mueller-Roeber, B., Fei, Z., Nunes-Nesi, A., Giovannoni, J. J. & Fernie, A. R. Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68, 999–1013 (2011).

Balazadeh, S., Siddiqui, H., Allu, A. D., Matallana-Ramirez, L. P., Caldana, C., Mehrnia, M., Zanor, M. I., Koehler, B. & Mueller-Roeber, B. A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant Journal 62, 250–264 (2010).

Espinoza, C., Degenkolbe, T., Caldana, C., Zuther, E., Leisse, A., Willmitzer, L., Hincha, D. K. & Hannah, M. A. Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis. PLoS One 5, e14101 (2010).

Hannah, M. A., Caldana, C., Steinhauser, D., Balbo, I., Fernie, A. R. & Willmitzer, L. Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression. Plant Physiology 152, 2120–2129 (2010).

Massonnet, C., Vile, D., Fabre, J., Hannah, M. A., Caldana, C., Lisec, J., Beemster, G. T. S., Meyer, R. C., Messerli, G., Gronlund, J. T., Perkovic, J., Wigmore, E., May, S., Bevan, M. W., Meyer, C., Rubio-Diaz, S., Weigel, D., Micol, J. L., Buchanan-Wollaston, V., Fiorani, F., Walsh, S., Rinn, B., Gruissem, W., Hilson, P., Hennig, L., Willmitzer, L. & Granier, C. Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories. Plant Physiology 152, 2142–2157 (2010).

Robles, P., Fleury, D., Candela, H., Cnops, G., Alonso-Peral, M. M., Anami, S., Falcone, A., Caldana, C., Willmitzer, L., Ponce, M. R., van Lijsebettens, M. & Micol, J. L. The RON1/FRY1/SAL1 Gene Is Required for Leaf Morphogenesis and Venation Patterning in Arabidopsis. Plant Physiology 152, 1357–1372 (2010).

Cuadros-Inostroza, A., Caldana, C., Redestig, H., Kusano, M., Lisec, J., Pena-Cortes, H., Willmitzer, L. & Hannah, M. A. TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, 428 (2009).

Caldana, C., Scheible, W.-R., Mueller-Roeber, B. & Ruzicic, S. A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, 7 (2007).

Mueller-Roeber, B., Riano-Pachon, D. M., Ruzicic, S., Skirycz, A., Caldana, C., Witt, I. & Zanor, M.-I. Pflanzliche Regulatorproteine. Bioforum 6, 32–34 (2005).

Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Buttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., Kirchner, O., Lanz, C., Linke, B., McHardy, A. C., Meyer, F., Mittenhuber, G., Nies, D. H., Niesbach-Klosgen, U., Patschkowski, T., Ruckert, C., Rupp, O., Schneiker, S., Schuster, S. C., Vorholter, F. J., Weber, E., Puhler, A., Bonas, U., Bartels, D. & Kaiser, O. Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187, 7254–7266 (2005).

de Souza, A. A., Takita, M. A., Coletta, H. D., Caldana, C., Yanai, G. M., Muto, N. H., de Oliveira, R. C., Nunes, L. R. & Machado, M. A. Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro. FEMS Microbiology Letters 237, 341–353 (2004).

de Souza, A. A., Takita, M. A., Coletta, H. D., Caldana, C., Goldman, G. H., Yanai, G. M., Muto, N. H., de Oliveira, R. C., Nunes, L. R. & Machado, M. A. Analysis of gene expression in two growth states of Xylella fastidiosa and its relationship with pathogenicity. Molecular Plant-Microbe Interactions 16, 867–875 (2003).

Martins, M. C. M., Mafra, V., Monte-Bello, C. C. & Caldana, C. in Advances in Plant Omics and Systems Biology Approaches (ed. Winck, F. W.) 1346, 91–105 (2022).

Hoffmam, Z. B., da Silva, V. C. H., Martins, M. C. M. & Caldana, C. in Mass Spectrometry in Chemical Biology: Evolving Applications 159–172 (Royal Society of Chemistry, 2018). doi:10.1039/9781788010399-00159

Martins, M. C. M., Caldana, C., Wolf, L. D. & de Abreu, L. G. F. in Methods in Molecular Biology (ed. António, C.) 1778, 3–18 (Humana Press, 2018).

Ricci-Silva, M. E., Vaz, B. G., Vasconcelos, G. A., Romão, W., Aricetti, J. A., Caldana, C. & Abdelnur, P. V. in Analytical Techniques and Methods for Biomass 115–141 (Springer International Publishing Switzerland, 2016). doi:10.1007/978-3-319-41414-0_5

Dobrenel, T., Caldana, C., Hanson, J., Robaglia, C., Vincentz, M., Veit, B. & Meyer, C. TOR Signaling and Nutrient Sensing. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 67 261–285 (2016). doi:10.1146/annurev-arplant-043014-114648