Journal Article (156)
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Journal Article
168 (12), pp. 1395 - 1405 (2011)
Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. Journal of Plant Physiology 102.
Journal Article
10 (7), pp. 2979 - 2991 (2011)
MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 103.
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2, p. 54 (2011)
Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 104.
Journal Article
12 (1), p. 429 (2011)
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 105.
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4, p. 483 (2011)
Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 106.
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68 (6), pp. 999 - 1013 (2011)
Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 107.
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2, p. 43 (2011)
SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data. Frontiers in Plant Science 108.
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7 (6), p. e1002155 (2011)
Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites. PLoS Genetics 109.
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17 (7), pp. 1247 - 1257 (2011)
The influence of the local sequence environment on RNA loop structures. Rna-a Publication of the Rna Society 110.
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12, p. 579 (2011)
Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 111.
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23 (7), pp. 915 - 926 (2010)
Expression Pattern Suggests a Role of MiR399 in the Regulation of the Cellular Response to Local Pi Increase During Arbuscular Mycorrhizal Symbiosis. Molecular Plant-Microbe Interactions 112.
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11, p. 188 (2010)
Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 113.
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82 (9), pp. 3573 - 3580 (2010)
Discrimination of Wine Attributes by Metabolome Analysis. Analytical Chemistry 114.
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38 (Database issue), pp. D828 - D834 (2010)
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Research 115.
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6 (2), pp. 322 - 333 (2010)
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 116.
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153 (2), pp. 642 - 651 (2010)
Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 117.
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38 (Database issue), pp. D326 - D330 (2010)
PTGL: a database for secondary structure-based protein topologies. Nucleic Acids Research 118.
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267 (1), pp. 7 - 14 (2010)
Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 119.
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38, pp. D822 - D827 (2010)
PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Research 120.
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11, p. 411 (2010)
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 121.
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38 (3), pp. 970 - 980 (2010)
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. Nucleic Acids Research 122.
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26 (13), pp. 1671 - 1672 (2010)
Modeling RNA loops using sequence homology and geometric constraints. Bioinformatics 123.
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8 (8), pp. 900 - 911 (2010)
Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 124.
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14 (3), pp. 249 - 259 (2010)
Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 125.
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22 (8), pp. 2872 - 2893 (2010)
Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 126.
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11, p. 607 (2010)
The complexity of gene expression dynamics revealed by permutation entropy. BMC Bioinformatics 127.
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14 (3), pp. 261 - 274 (2010)
Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 128.
Journal Article
37 (9), p. e66 (2009)
Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 129.
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5 (12), pp. 1889 - 1903 (2009)
An integrative approach towards completing genome-scale metabolic networks. Molecular Biosystems 130.
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69 (1-2), pp. 133 - 153 (2009)
Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 131.
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10, p. 117 (2009)
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 132.
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81 (15), pp. 6546 - 6551 (2009)
13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Analytical Chemistry 133.
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37 (Database issue), pp. 338 - 341 (2009)
JAIL: a structure-based interface library for macromolecules. Nucleic Acids Research 134.
Journal Article
49 (1), pp. 82 - 91 (2009)
An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 135.
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9 (7), pp. 1916 - 1924 (2009)
Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 136.
Journal Article
28 (5), pp. 431 - 439 (2009)
Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance. Molecules and Cells 137.
Journal Article
181 (3), pp. 1115 - 1127 (2009)
Single Nucleotide Polymorphisms in the Allene Oxide Synthase 2 Gene Are Associated With Field Resistance to Late Blight in Populations of Tetraploid Potato Cultivars. Genetics 138.
Journal Article
150 (3), pp. 1541 - 1555 (2009)
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 139.
Journal Article
37 (Database issue), pp. 954 - 959 (2009)
GabiPD: the GABI primary database-a plant integrative 'omics' database. Nucleic Acids Research 140.
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2, p. 100 (2008)
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 141.
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80 (24), pp. 9417 - 9425 (2008)
High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 142.
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36 (Database issue), pp. D1015 - D1021 (2008)
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 143.
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8 (20), pp. 4214 - 4225 (2008)
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 144.
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18 (10), pp. 1582 - 1591 (2008)
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 145.
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1, pp. 17 - 19 (2008)
Die GABI-Primaerdatenbank GabiPD - Komplexe Integration von GABI-Daten aus Modell- und Nutzpflanzen. GenomXPress: Informationen aus der Deutschen Genomforschung 146.
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4, p. 11 (2008)
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 147.
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3, pp. 16 - 17 (2008)
Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 148.
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179 (1), pp. 157 - 166 (2008)
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 149.
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9, p. 356 (2008)
Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 150.
Journal Article
254 (4), pp. 807 - 816 (2008)
Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology