Publications of the Group

Journal Article (16)

1.
Journal Article
Arvidsson, S.; Perez-Rodriguez, P.; Mueller-Roeber, B.: A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytologist 191 (3), pp. 895 - 907 (2011)
2.
Journal Article
Branscheid, A.; Devers, E. A.; May, P.; Krajinski, F.: Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signaling & Behavior 6 (10), pp. 1609 - 1611 (2011)
3.
Journal Article
Devers, E. A.; Branscheid, A.; May, P.; Krajinski, F.: Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis. Plant Physiology 156 (4), pp. 1990 - 2010 (2011)
4.
Journal Article
Giavalisco, P.; Li, Y.; Matthes, A.; Eckhardt, A.; Hubberten, H.-M.; Hesse, H.; Segu, S.; Hummel, J.; Koehl, K. I.; Willmitzer, L.: Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal 68 (2), pp. 364 - 376 (2011)
5.
Journal Article
Haedrich, N.; Gibon, Y.; Schudoma, C.; Altmann, T.; Lunn, J. E.; Stitt, M.: Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. Journal of Plant Physiology 168 (12), pp. 1395 - 1405 (2011)
6.
Journal Article
Hoehenwarter, W.; Larhlimi, A.; Hummel, J.; Egelhofer, V.; Selbig, J.; van Dongen, J. T.; Wienkoop, S.; Weckwerth, W.: MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10 (7), pp. 2979 - 2991 (2011)
7.
Journal Article
Hummel, J.; Segu, S.; Li, Y.; Irgang, S.; Jueppner, J.; Giavalisco, P.: Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 2, p. 54 (2011)
8.
Journal Article
Janssen, S.; Schudoma, C.; Steger, G.; Giegerich, R.: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12 (1), p. 429 (2011)
9.
Journal Article
Kryvych, S.; Kleessen, S.; Ebert, B.; Kersten, B.; Fisahn, J.: Proteomics - The key to understanding systems biology of Arabidopsis trichomes. Phytochemistry 72 (10), pp. 1061 - 1070 (2011)
10.
Journal Article
Lenz, D.; May, P.; Walther, D.: Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 4, p. 483 (2011)
11.
Journal Article
Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)
12.
Journal Article
Ryngajllo, M.; Childs, L.; Lohse, M.; Giorgi, F. M.; Lude, A.; Selbig, J.; Usadel, B.: SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data. Frontiers in Plant Science 2, p. 43 (2011)
13.
Journal Article
Scharff, L. B.; Childs, L.; Walther, D.; Bock, R.: Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites. PLoS Genetics 7 (6), p. e1002155 (2011)
14.
Journal Article
Schudoma, C.: It's a loop world – single strands in RNA as structural and functional elements. BioMolecular Concepts 2 (3), pp. 171 - 181 (2011)
15.
Journal Article
Schudoma, C.; Larhlimi, A.; Walther, D.: The influence of the local sequence environment on RNA loop structures. Rna-a Publication of the Rna Society 17 (7), pp. 1247 - 1257 (2011)
16.
Journal Article
Toepel, J.; Albaum, S. P.; Arvidsson, S.; Goesmann, A.; La Russa, M.; Rogge, K.; Kruse, O.: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12, p. 579 (2011)

Book Chapter (2)

17.
Book Chapter
Kopka, J.; Walther, D.; Allwood, J. W.; Goodacre, R.: Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Ed., pp. 317 - 342 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
18.
Book Chapter
May, P.; Christian, N.; Ebenhoeh, O.; Weckwerth, W.; Walther, D.: Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Bioinformatics for Comparative Proteomics, 21, 2010/12/01 Ed., pp. 341 - 363 (Eds. Wu, C. H.; Chen, C.). Humana Press Inc., Totowa, NJ, USA (2011)
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