Publications of the Group

Journal Article (14)

1.
Journal Article
Childs, L.; Nikoloski, Z.; May, P.; Walther, D.: Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 37 (9), p. e66 (2009)
2.
Journal Article
Christian, N.; May, P.; Kempa, S.; Handorf, T.; Ebenhoeh, O.: An integrative approach towards completing genome-scale metabolic networks. Molecular Biosystems 5 (12), pp. 1889 - 1903 (2009)
3.
Journal Article
Degenkolbe, T.; Do, P. T.; Zuther, E.; Repsilber, D.; Walther, D.; Hincha, D. K.; Koehl, K. I.: Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 69 (1-2), pp. 133 - 153 (2009)
4.
Journal Article
Durek, P.; Schudoma, C.; Weckwerth, W.; Selbig, J.; Walther, D.: Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, p. 117 (2009)
5.
Journal Article
Giavalisco, P.; Koehl, K. I.; Hummel, J.; Seiwert, B.; Willmitzer, L.: 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Analytical Chemistry 81 (15), pp. 6546 - 6551 (2009)
6.
Journal Article
Guenther, S.; von Eichborn, J.; May, P.; Preissner, R.: JAIL: a structure-based interface library for macromolecules. Nucleic Acids Research 37 (Database issue), pp. 338 - 341 (2009)
7.
Journal Article
Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), pp. 82 - 91 (2009)
8.
Journal Article
Kersten, B.; Agrawal, G. K.; Durek, P.; Neigenfind, J.; Schulze, W. X.; Walther, D.; Rakwal, R.: Plant phosphoproteomics: An update. Proteomics 9 (4), pp. 964 - 988 (2009)
9.
Journal Article
Kierszniowska, S.; Walther, D.; Schulze, W. X.: Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 9 (7), pp. 1916 - 1924 (2009)
10.
Journal Article
Kim, J. A.; Cho, K.; Singh, R.; Jung, Y. H.; Jeong, S. H.; Kim, S. H.; Lee, J. E.; Cho, Y. S.; Agrawal, G. K.; Rakwal, R. et al.; Tamogami, S.; Kersten, B.; Jeon, J. S.; An, G.; Jwa, N. S.: Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance. Molecules and Cells 28 (5), pp. 431 - 439 (2009)
11.
Journal Article
May, P.; Christian, J. O.; Kempa, S.; Walther, D.: ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. BMC Genomics 10, p. 209 (2009)
12.
Journal Article
Pajerowska-Mukhtar, K.; Stich, B.; Achenbach, U.; Ballvora, A.; Lubeck, J.; Strahwald, J.; Tacke, E.; Hofferbert, H. R.; Ilarionova, E.; Bellin, D. et al.; Walkemeier, B.; Basekow, R.; Kersten, B.; Gebhardt, C.: Single Nucleotide Polymorphisms in the Allene Oxide Synthase 2 Gene Are Associated With Field Resistance to Late Blight in Populations of Tetraploid Potato Cultivars. Genetics 181 (3), pp. 1115 - 1127 (2009)
13.
Journal Article
Pant, B. D.; Musialak-Lange, M.; Nuc, P.; May, P.; Buhtz, A.; Kehr, J.; Walther, D.; Scheible, W.-R.: Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 150 (3), pp. 1541 - 1555 (2009)
14.
Journal Article
Riano-Pachon, D. M.; Nagel, A.; Neigenfind, J.; Wagner, R.; Basekow, R.; Weber, E.; Mueller-Roeber, B.; Diehl, S.; Kersten, B.: GabiPD: the GABI primary database-a plant integrative 'omics' database. Nucleic Acids Research 37 (Database issue), pp. 954 - 959 (2009)

Book Chapter (2)

15.
Book Chapter
Kempa, S.; Walther, D.; Ebenhoeh, O.; Weckwerth, W.: Metabolic Engineering. In: Molecular Biology and Biotechnology, pp. 194 - 217 (Eds. Walker, J.; Rapley, R.). Royal Society of Chemistry (2009)
16.
Book Chapter
Kersten, B.; Feilner, T.: Protein microarrays for phosphorylation studies. In: The Protein Protocols Handbook, Vol. 162, pp. 1567 - 1578 (Ed. Walker, J. M.). Humana Press Inc., Totowa, NJ, USA (2009)

Meeting Abstract (1)

17.
Meeting Abstract
Meyer, R. C.; Lisec, J.; Sulpice, R.; Steinfath, M.; Gaertner, T.; Becher, M.; Witucka-Wall, H.; von Korff, M.; Gunther, T.; Childs, L. et al.; Scharr, H.; Walter, A.; Torjek, O.; Fiehn, O.; Schurr, U.; Schmid, K.; Walther, D.; Gibon, Y.; Selbig, J.; Stitt, M.; Willmitzer, L.; Altmann, T.: Analysis of Arabidopsis natural variation in biomass accumulation and metabolism. In New Biotechnology, 25, p. S307 - S307. (2009)
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