Publications of the Group

Durek, P.; Walther, D.: The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, p. 100 (2008)

Fait, A.; Fromm, H.; Walther, D.; Galili, G.; Fernie, A. R.: Highway or byway: the metabolic role of the GABA shunt in plants. Trends in Plant Science 13 (1), pp. 14 - 19 (2008)

Giavalisco, P.; Hummel, J.; Lisec, J.; Inostroza, A. C.; Catchpole, G.; Willmitzer, L.: High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 80 (24), pp. 9417 - 9425 (2008)

Heazlewood, J. L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W. X.: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), pp. D1015 - D1021 (2008)

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)

Kersten, B.; Nagel, A.; Riano-Pachon, D.M.; Neigenfind, J.; Weber, E.; Wagner, R.; Diehl, S.: Die GABI-Primaerdatenbank GabiPD - Komplexe Integration von GABI-Daten aus Modell- und Nutzpflanzen. GenomXPress: Informationen aus der Deutschen Genomforschung 1, pp. 17 - 19 (2008)

Koehl, K. I.; Basler, G.; Lüdemann, A.; Selbig, J.; Walther, D.: A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, p. 11 (2008)

Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

Neigenfind, J.; Gyetvai, G.; Basekow, R.; Diehl, S.; Achenbach, U.; Gebhardt, C.; Selbig, J.; Kersten, B.: Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 9, p. 356 (2008)

Nikoloski, Z.; Grimbs, S.; May, P.; Selbig, J.: Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254 (4), pp. 807 - 816 (2008)

Steinfath, M.; Groth, D.; Lisec, J.; Selbig, J.: Metabolite profile analysis: from raw data to regression and classification. Physiologia Plantarum 132 (2), pp. 150 - 161 (2008)

Strehmel, N.; Hummel, J.; Erban, A.; Strassburg, K.; Kopka, J.: Retention index thresholds for compound matching in GC-MS metabolite profiling. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 871 (2), pp. 182 - 190 (2008)

Kersten, B.: Time to search for kinase substrates. In: Plant Proteomics: Technologies, Strategies, and Applications, 33, pp. 485 - 498 (Eds. Rakwal, R.; Agrawal, G.K.). Wiley-Interscience, Hoboken, NY, USA (2008)