Journal Article (156)
51.
Journal Article
91 (2), pp. 251 - 262 (2017)
Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 52.
Journal Article
29 (12), pp. 3085 - 3101 (2017)
Shine-Dalgarno Sequences Play an Essential Role in the Translation of Plastid mRNAs in Tobacco. Plant Cell 53.
Journal Article
213 (2), pp. 900 - 915 (2017)
Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 54.
Journal Article
45 (W1), pp. W6 - W11 (2017)
GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 55.
Journal Article
8, 1831 (2017)
Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study. Frontiers in Plant Science 56.
Journal Article
84 (5), pp. 565 - 579 (2016)
Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding. Proteins-Structure Function and Bioinformatics 57.
Journal Article
2 (4), 16040 (2016)
Mobile RNAs convey the message. Nature Plants 58.
Journal Article
The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, pp. 31 - 47 (2016)
59.
Journal Article
17, 185 (2016)
The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 60.
Journal Article
39 (11), pp. 2370 - 2389 (2016)
The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 61.
Journal Article
28 (6), pp. 1237 - 1249 (2016)
tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants. Plant Cell 62.
Journal Article
11 (6), pp. 1587 - 1597 (2015)
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 63.
Journal Article
1, 15025 (2015)
Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 64.
Journal Article
11 (2), e1004049 (2015)
The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 65.
Journal Article
1306, pp. 177 - 194 (2015)
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 66.
Journal Article
11, 34 (2015)
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads. Plant Methods 67.
Journal Article
2, 51 (2015)
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 68.
Journal Article
15, 137 (2015)
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 69.
Journal Article
42 (7), pp. 655 - 667 (2015)
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 70.
Journal Article
10 (3), p. e0120533 - e0120533 (2015)
Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One 71.
Journal Article
164 (1), pp. 181 - 200 (2014)
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 72.
Journal Article
166 (4), pp. 1891 - 911 (2014)
Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology 73.
Journal Article
37 (5), pp. 1250 - 1258 (2014)
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 74.
Journal Article
26 (6), pp. 2310 - 2350 (2014)
Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 75.
Journal Article
26 (6), pp. 2367 - 2389 (2014)
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell 76.
Journal Article
65 (4), pp. 1051 - 1068 (2014)
The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany 77.
Journal Article
4, 540 (2013)
Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 78.
Journal Article
25 (10), pp. 4209 - 4226 (2013)
A Mediator of Singlet Oxygen Responses in Chlamydomonas reinhardtii and Arabidopsis Identified by a Luciferase-Based Genetic Screen in Algal Cells. The Plant Cell 79.
Journal Article
11 (6), pp. 717 - 733 (2013)
New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics. PLANT BIOTECHNOLOGY JOURNAL 80.
Journal Article
25 (6), pp. 1917 - 1927 (2013)
Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales. The Plant Cell 81.
Journal Article
3 (1), pp. 1 - 23 (2013)
The Metabolic Interplay between Plants and Phytopathogens. Metabolites 82.
Journal Article
8 (11), e79909 (2013)
Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation. PLoS One 83.
Journal Article
3, 154 (2012)
GabiPD – The GABI Primary Database integrates plant proteomic data with gene-centric information. Frontiers in Plant Science 84.
Journal Article
39 (10-11), pp. 948 - 957 (2012)
Data management pipeline for plant phenotyping in a multisite project. Functional Plant Biology 85.
Journal Article
158 (4), pp. 1534 - 1541 (2012)
Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline. Plant Physiology 86.
Journal Article
3, p. 207 (2012)
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. Frontiers in Plant Science 87.
Journal Article
35 (12), pp. 2143 - 2154 (2012)
Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1. Plant, Cell and Environment 88.
Journal Article
7 (4), p. e34686 (2012)
Systematic Analysis of Stability Patterns in Plant Primary Metabolism. PLoS One 89.
Journal Article
28 (19), pp. 2546 - 2547 (2012)
A MATLAB toolbox for structural kinetic modeling. Bioinformatics 90.
Journal Article
3, p. 1319 (2012)
Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 91.
Journal Article
287 (14), pp. 11122 - 11131 (2012)
Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 92.
Journal Article
3, p. 217 (2012)
A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 93.
Journal Article
6 (1), p. 16 (2012)
Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 94.
Journal Article
3, p. 272 (2012)
Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone. Frontiers in plant science 95.
Journal Article
72 (1), pp. 115 - 128 (2012)
Identification of cis-elements conferring high levels of gene expression in non-green plastids. Plant Journal 96.
Journal Article
35 (10), pp. 1860 - 1878 (2012)
Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions. Plant Cell and Environment 97.
Journal Article
191 (3), pp. 895 - 907 (2011)
A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytologist 98.
Journal Article
6 (10), pp. 1609 - 1611 (2011)
Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signaling & Behavior 99.
Journal Article
156 (4), pp. 1990 - 2010 (2011)
Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis. Plant Physiology 100.
Journal Article
68 (2), pp. 364 - 376 (2011)
Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal