Publications of Joachim Kopka
Journal Article (215)
1.
Journal Article
140, 109114 (2022)
Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 2.
Journal Article
8 (5), 498 (2022)
The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi 3.
Journal Article
8, pp. 78 - 91 (2021)
Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 4.
Journal Article
22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 5.
Journal Article
22 (19), 10451 (2021)
Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 6.
Journal Article
72 (18), pp. 6544 - 6569 (2021)
Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 7.
Journal Article
7 (9), 765 (2021)
Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 8.
Journal Article
12, 697324 (2021)
Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 9.
Journal Article
118 (1), pp. 637 - 652 (2021)
Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 10.
Journal Article
108 (4), pp. 1213 - 1233 (2021)
Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 11.
Journal Article
11 (1), 2410 (2021)
Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 12.
Journal Article
44 (3), pp. 870 - 884 (2021)
Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 13.
Journal Article
22 (15), 8172 (2021)
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 14.
Journal Article
4 (1), 181 (2021)
Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 15.
Journal Article
22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 16.
Journal Article
12, 656683 (2021)
Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 17.
Journal Article
33, 100719 (2021)
Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 18.
Journal Article
11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 19.
Journal Article
61, 102002 (2021)
Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 20.
Journal Article
12, 687799 (2021)
Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 21.
Journal Article
44 (7), pp. 2034 - 2048 (2021)
Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 22.
Journal Article
12, 675227 (2021)
Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 23.
Journal Article
12 (4), 494 (2021)
Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 24.
Journal Article
22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 25.
Journal Article
44 (3), pp. 915 - 930 (2021)
Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 26.
Journal Article
11 (6), 349 (2021)
The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 27.
Journal Article
9, e54207 (2020)
Underground isoleucine biosynthesis pathways in E. coli. eLife 28.
Journal Article
9 (7), 892 (2020)
Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 29.
Journal Article
11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 30.
Journal Article
16 (7), 79 (2020)
Untargeted metabolomics as a hypothesis-generation tool in plant protection product discovery: Highlighting the potential of trehalose and glycerol metabolism of fungal conidiospores as novel targets. Metabolomics 31.
Journal Article
11, 948 (2020)
Systematic review of plant ribosome heterogeneity and specialization. Frontiers in Plant Science 32.
Journal Article
10 (3), 121 (2020)
Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity. Metabolites 33.
Journal Article
21 (9), 3187 (2020)
Season affects yield and metabolic profiles of rice (Oryza sativa) under high night temperature stress in the field. International Journal of Molecular Sciences 34.
Journal Article
6, pp. 1031 - 1043 (2020)
Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 35.
Journal Article
11, 1118 (2020)
Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 36.
Journal Article
8 (8), giz102 (2019)
Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field. GigaScience 37.
Journal Article
8 (5), giz050 (2019)
Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions. GigaScience 38.
Journal Article
180 (1), pp. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 39.
Journal Article
20 (19), 4665 (2019)
Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 40.
Journal Article
10, 1617 (2019)
Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science 41.
Journal Article
9 (1), 9697 (2019)
Discovery of food identity markers by metabolomics and machine learning technology. Scientific Reports 42.
Journal Article
9 (6), 305 (2019)
Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 43.
Journal Article
68 (12), pp. 2272 - 2286 (2019)
Metabolomics identifies a biomarker revealing in vivo loss of functional β-cell mass before diabetes onset. Diabetes 44.
Journal Article
72 (2), pp. 195 - 202 (2019)
The metabolic response of suspension-cultured cells from blast-resistant and -susceptible rice (Oryza sativa L.) genotypes to a Pyricularia oryzae elicitor. Indian Phytopathology 45.
Journal Article
144, pp. 100 - 109 (2019)
The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species. Plant Physiology and Biochemistry 46.
Journal Article
42 (1-SI), pp. 295 - 309 (2019)
Ion-dependent metabolic responses of Vicia faba L. to salt stress. Plant, Cell and Environment 47.
Journal Article
10, 106 (2019)
Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information? Frontiers in Plant Science 48.
Journal Article
9 (1), 2289 (2019)
Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 49.
Journal Article
63 (1-SI), 1800384 (2019)
Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies. Molecular Nutriton & Food Research 50.
Journal Article
21 (SI suppl.), pp. 109 - 119 (2019)
Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana. Plant Biology 51.
Journal Article
42 (3- SI), pp. 854 - 873 (2019)
Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis. Plant, Cell and Environment 52.
Journal Article
177 (3), pp. 1152 - 1169 (2018)
NLR Mutations Suppressing Immune Hybrid Incompatibility and Their Effects on Disease Resistance. Plant Physiology 53.
Journal Article
176 (3), pp. 2251 - 2276 (2018)
Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 54.
Journal Article
19 (12), 4008 (2018)
Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant’s Response to Herbivory and Impairs Larval Performance. International Journal of Molecular Sciences 55.
Journal Article
9, 1718 (2018)
The Synechocystis sp PCC 6803 Genome Encodes Up to Four 2-Phosphoglycolate Phosphatases. Frontiers in Plant Science 56.
Journal Article
20 (8-SI), pp. 2757 - 2768 (2018)
The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp PCC 6803. Environmental Microbiology Reports 57.
Journal Article
8, 216 (2018)
Primed primary metabolism in systemic leaves: a functional systems analysis. Scientific Reports 58.
Journal Article
16 (4), pp. 939 - 950 (2018)
Metabolite and transcript markers for the prediction of potato drought tolerance. Plant Biotechnology Journal 59.
Journal Article
13 (1), 87 (2017)
Rapid in situ 13C tracing of sucrose utilization in Arabidopsis sink and source leaves. Plant Methods 60.
Journal Article
18 (1), 731 (2017)
Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana. BMC Genomics