Max-Planck-Institut für Molekulare Pflanzenphysiologie

Publikationen von Joachim Kopka

Zeitschriftenartikel (238)

1.

Zeitschriftenartikel

Kor, S.; Tiozon, R.; Kim, S.-R.; Buenafe, R. J. Q.; Ramos-Castrosanto, A. R.; Pratap, V.; Wake, E.; Fraser, P. D.; Erban, A.; Kopka, J. et al.; Butardo Jr., V.; Fernie, A. R.; Sreenivasulu, N.: Genome editing of OsSBEIIb rewires starch architecture to lower predicted glycemic index and enhance protein quality in rice endosperm. Current Research in Food Science 13, 101513 (2026)

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2.

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Melo, T.O.; Kopka, J.; Wendling, I.; Erban, A.; Marques, F. A.; Hansel, F. A.: Integrated multivariate and univariate Analysis of circadian metabolomic signatures in Yerba Mate clones in a semi‐hydroponic system. Physiologia Plantarum 178 (3), e70917 (2026)

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3.

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Lopes, A.; Sandoval-Ibanez, O.; Arrivault, S.; Rolo, D.; Loiacono, F.V.; Erban, A.; Karcher, D.; Obst, S.; Ruf, S.; Kopka, J. et al.; Bock, R.: Plastid engineering for photosynthesis-driven synthesis of hyaluronic acid in tobacco. Plant Biotechnology Journal 24 (4), S. 2541 - 2558 (2026)

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4.

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Doghri, M.; Rodríguez, V.; Erban, A.; Alcántara-Enguidános, A.; Rosa-Téllez, S.; Kopka, J.; Renau-Morata, B.; Ros, R.: Increasing temperatures and CO2 impact on primary and specialized metabolism of Brassica species. PLANT STRESS 18, 101083 (2025)

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5.

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Jaeger, C.; Lintelmann, J.; Franke, R.; Artati, A.; Cecil, A.; Broda, F.; Klawonn, F.; Erban, A.; Kopka, J.; Fuchs, B. et al.; Sommer, U.; Neumann-Schaal, M.; O’Connor, G.: Analytical practices, use and needs of standard and reference materials in the German-speaking metabolomics community: results of an online survey. Metabolomics 21, 171 (2025)

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6.

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Wittemeier, L.; Rajarathinam, Y.; Erban, A.; Hagemann, M.; Kopka, J.: Positional 13C enrichment analysis of aspartate determines PEPC activity in vivo. New Phytologist 248 (1), S. 401 - 414 (2025)

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7.

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Zhao, T.; Vink, S.N.; Jia, X.; Erban, A.; Schaarschmidt, S.; Kopka, J.; Zuther, E.; Treder, K.; Michałowska, D.; Guyoneaud, R. et al.; Elzenga, J.T.M.; Attard, E.; Salles, J.F.: Unveiling potato cultivars with microbiome interactive traits for sustainable Aagricultural production. Plant, Cell and Environment 49 (10), S. 7511 - 7525 (2025)

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8.

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Lehr, P.P.; Erban, A.; Kopka, J.; Zörb, C.: Sulfate enhances metabolic acclimation under drought stress – a comparative study of grapevine and maize. Plant Stress 17, 100938 (2025)

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9.

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Sagu, S.T.; Schnepf, B.; Stenzel, P.; Nichani, K.; Erban, A.; Kopka, J.; Rawel, H.M.; Henze, A.: Discovery of Species-Specific Peptide Markers for Superseed Authentication Using Targeted LC-MS/MS Proteomics. Molecules 30 (14), 2993 (2025)

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10.

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Samo, N.; Trejo-Arellano, M.; Gahurová, L.; Erban, A.; Ebert, A.; Rivière, Q.; Kubásek, J.; Aflaki, F.; Mondeková, H.; Schlereth, A. et al.; Dubois, A.; Zhou, M.; Novak, O.; Santrucek, J.; Bouyer, D.; Roudier, F.; Kopka, J.; Mozgová, I.: Polycomb repressive complex 2 facilitates the transition from heterotrophy to photoautotrophy during seedling emergence. Plant Cell 37 (7), koaf148 (2025)

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11.

Zeitschriftenartikel

Lehr, P.; Erban, A.; Hartwig, R.; Wimmer, M.; Kopka, J.; Zörb, C.: Guard cell-specific metabolic responses to drought stress in maize. Journal of Environmental Quality 211 (2), e70049 (2025)

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12.

Zeitschriftenartikel

Martinez-Seidel, F.; Suwanchaikasem, P.; Gentry-Torfer, D.; Rajarathinam, Y.; Ebert, A.; Erban, A.; Firmino, A.; Nie, S.; Leeming, M.; Williamson, N. et al.; Roessner, U.; Kopka, J.; Boughton, B. A.: Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 380 (1921), 20230384 (2025)

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13.

Zeitschriftenartikel

Murillo, E.; Martinez-Seidel, F.; Atanasov, K. E.; Gentry-Torfer, D.; Firmino, A.; Augusto, A.; Erban, A.; Nie, S.; Leeming, M. G.; Suwanchaikasem, P. et al.; Boughton, B. A.; Williamson, N. A.; Roessner, U.; Kopka, J.; Alcázar , R.: Polyamines and flg22 reshape the ribosomal protein composition of actively translating ribosomes in plants. Plant Physiology and Biochemistry 220, 109585 (2025)

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14.

Zeitschriftenartikel

Rajarathinam, Y.; Wittemeier, L.; Gutekunst, K.; Hagemann, M.; Kopka, J.: Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology 197 (2), kiaf020 (2025)

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15.

Zeitschriftenartikel

Lehr, P.P.; Erban, A.; Hartwig, R.P.; Wimmer, M.A.; Kopka, J.; Zörb, C.: Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 217, 109262 (2024)

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16.

Zeitschriftenartikel

Li, B.; Armarego-Marriott, T.; Kowalewska, Ł.; Thiele, W.; Erban, A.; Ruf, S.; Kopka, J.; Schöttler, M. A.; Bock, R.: Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 36 (12), S. 4862 - 4880 (2024)

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17.

Zeitschriftenartikel

Weiller, F.; Diniz, I.; Pimentel, D.; Erban, A.; Reis, P.; Soares, F.; Rego, C.; Kopka, J.; Fortes, A.M.: Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 40, 100378 (2024)

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18.

Zeitschriftenartikel

Ebert, A.; Alseekh, S.; D´Andrea, L.; Roessner, U.; Bock, R.; Kopka, J.: Detailed profiling of 17-hydroxygeranyllinalool diterpene glycosides from nicotiana species reveals complex reaction networks of conjugation isomers. Metabolites 14 (10), 562 (2024)

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19.

Zeitschriftenartikel

Woźniak, N.J.; Sartori, K.; Kappel, C.; Tran, T.C.; Zhao, L.; Erban, A.; Gallinger, J.; Fehrle, I.; Jantzen, F.; Orsucci, M. et al.; Ninkovic, V.; Rosa, S.; Lenhard, M.; Kopka, J.; Sicard, A.: Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology 34 (12), S. 2702 - 2711.e6 (2024)

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20.

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Gentry-Torfer, D.; Murillo, E.; Barrington, C. L.; Nie, S.; Leeming, M. G.; Suwanchaikasem, P.; Williamson, N. A.; Roessner, U.; Boughton, B. A.; Kopka, J. et al.; Martinez-Seidel, F.: Streamlining protein fractional synthesis rates using SP3 beads and stable isotope mass spectrometry: A case study on the plant ribosome. Bio-protocol 14 (9), e4981 (2024)

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21.

Zeitschriftenartikel

Rosa-Téllez, S.; Alcántara-Enguídanos, A.; Martinez-Seidel, F.; Casatejada-Anchel, R.; Saeheng, S.; Bailes, C. L.; Erban, A.; Medeiros, D.B.; Alepúz, P.; Matus, J. T. et al.; Kopka, J.; Muñoz-Bertomeu, J.; Krueger, S.; Roje, S.; Fernie, A. R.; Ros, R.: The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 36 (2), koad256, S. 404 - 426 (2024)

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22.

Zeitschriftenartikel

Daubermann, A. G.; Lima, V. F.; Erban, A.; Kopka, J.; Fernie, A. R.; Schwarzländer, M.; dos Anjos, L.; Daloso, D. M.: Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology (2024)

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23.

Zeitschriftenartikel

Schilling, F.; Schumacher, C.; Koehl, K. I.; Sprenger, H.; Kopka, J.; Peters, R.; Haas, M.; Zuther, E.; Horn, R.: Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports 14 (1), 5476 (2024)

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24.

Zeitschriftenartikel

Zuther, E.; Erban, A.; Kopka, J.; Pagter, M.: Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum 176 (1), e14201 (2024)

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25.

Zeitschriftenartikel

Siodmak, A.; Martinez-Seidel, F.; Rayapuram, N.; Bazin, J.; Alhoraibi, H.; Gentry-Torfer, D.; Tabassum, N.; Sheikh, A. H.; Kise, J.; Blilou, I. et al.; Crespi, M.; Kopka, J.; Hirt, H.: Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51 (21), S. 11876 - 11892 (2023)

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26.

Zeitschriftenartikel

Lima, V.F.; Freire, F.B.S.; Cândido-Sobrinho, S.A.; Porto, N.P.; Medeiros, D.B.; Erban, A.; Kopka, J.; Schwarzländer, M.; Fernie, A. R.; Daloso, D.M.: Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 201, 107862 (2023)

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27.

Zeitschriftenartikel

Soltani, F.; Nouri, M.; Shokrpour, M.; Alabboud, M.; Erban, A.; Fehrle, I.; Kopka, J.: Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding 142 (3), S. 372 - 387 (2023)

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28.

Zeitschriftenartikel

Soares, F.; Pimentel, D.; Erban, A.; Neves, C.; Reis, P.; Pereira, M.; Rego, C.; Gama-Carvalho, M.; Kopka, J.; Fortes, A. M.: Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes. Horticulture Research 9, uhac217 (2022)

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29.

Zeitschriftenartikel

Brigante, F. I.; Lucini Mas, A.; Erban, A.; Fehrle, I.; Martinez-Seidel, F.; Kopka, J.; Wunderlin, D. A.; Baroni, M. V.: Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, 109114 (2022)

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30.

Zeitschriftenartikel

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)

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31.

Zeitschriftenartikel

Vyse, K.; Schaarschmidt, S.; Erban, A.; Kopka, J.; Zuther, E.: Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174 (4), e13740 (2022)

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32.

Zeitschriftenartikel

Zhao, Y.; Agrawal, N.; Ghareeb, H.; Habib, M. T.; Dickmeis, S.; Schwachtje, J.; Iven, T. E.; Kopka, J.; Feussner, I.; Schirawski, J.: The Sporisorium reilianum effector Vag2 promotes head smut disease via suppression of plant defense responses. Journal of Fungi 8 (5), 498 (2022)

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33.

Zeitschriftenartikel

Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, S. 78 - 91 (2021)

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34.

Zeitschriftenartikel

Martinez-Seidel, F.; Hsieh, Y.-C.; Walther, D.; Kopka, J.; Firmino, A.: COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, 605 (2021)

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35.

Zeitschriftenartikel

Schaarschmidt, S.; Glaubitz, U.; Erban, A.; Kopka, J.; Zuther, E.: Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 22 (19), 10451 (2021)

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36.

Zeitschriftenartikel

Pimentel, D.; Amaro, R.; Erban, A.; Mauri, N.; Soares, F.; Rego, C.; Martínez-Zapater, J.M.; Mithöfer, A.; Kopka, J.; Fortes, A.M.: Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 72 (18), S. 6544 - 6569 (2021)

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37.

Zeitschriftenartikel

Nieva, A.S.; Romero, F. M.; Erban, A.; Carrasco, P.; Ruiz, O. A.; Kopka, J.: Metabolic profiling and metabolite correlation network analysis reveal that fusarium solani induces differential metabolic responses in Lotus japonicus and Lotus tenuis against severe phosphate starvation. Journal of Fungi 7 (9), 765 (2021)

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38.

Zeitschriftenartikel

Gao, J.; van Kleeff, P.J.M.; de Boer, M.H.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A.H.: Ion homeostasis and metabolome analysis of arabidopsis 14-3-3 quadruple mutants to salt stress. Frontiers in Plant Science 12, 697324 (2021)

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39.

Zeitschriftenartikel

Agrawal, S.; Karcher, D.; Ruf, S.; Erban, A.; Hertle, A. P.; Kopka, J.; Bock, R.: Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 118 (1), S. 637 - 652 (2021)

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40.

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Lima, V. F.; Erban, A.; Daubermann, A. G.; Freire, F. B. S.; Porto, N. P.; Cândido-Sobrinho, S. A.; Medeiros, D.B.; Schwarzländer, M.; Fernie, A. R.; dos Anjos, L. et al.; Kopka, J.; Daloso, D. M.: Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 108 (4), S. 1213 - 1233 (2021)

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41.

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Cheong, B.E.; Beine-Golovchuk, O.; Gorka, M.; Ho, W.W.H.; Martinez-Seidel, F.; Firmino, A.; Skirycz, A.; Roessner, U.; Kopka, J.: Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11 (1), 2410 (2021)

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42.

Zeitschriftenartikel

Franzisky, B. L.; Geilfus, C.-M.; Romo-Perez, M. L.; Fehrle, I.; Erban, A.; Kopka, J.; Zorb, C.: Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44 (3), S. 870 - 884 (2021)

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43.

Zeitschriftenartikel

Ginsawaeng, O.; Gorka, M.; Erban, A.; Heise, C.; Brueckner, F.; Hoefgen, R.; Kopka, J.; Skirycz, A.; Hincha, D. K.; Zuther, E.: Characterization of the heat-stable proteome during seed germination in arabidopsis with special focus on LEA proteins. International Journal of Molecular Sciences 22 (15), 8172 (2021)

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44.

Zeitschriftenartikel

Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)

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45.

Zeitschriftenartikel

Martinez-Seidel, F.; Beine-Golovchuk, O.; Hsieh, Y.-C.; El Eshraky, K.; Gorka, M.; Cheong, B.-E.; Jimenez‐posada, E.V.; Walther, D.; Skirycz, A.; Roessner, U. et al.; Kopka, J.; Firmino, A.: Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22 (11), 6160 (2021)

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46.

Zeitschriftenartikel

Martinez-Seidel, F.; Suwanchaikasem, P.; Nie, S.; Leeming, M.G.; Firmino, A.; Williamson, N.A.; Kopka, J.; Roessner, U.; Boughton, B.A.: Membrane-enriched proteomics link ribosome accumulation and proteome reprogramming with cold acclimation in barley root meristems. Frontiers in Plant Science 12, 656683 (2021)

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47.

Zeitschriftenartikel

Melo, T.O.; Franciscon, L.; Brown, G.; Kopka, J.; Cunha, L.; Martinez-Seidel, F.; Madureira, L.A.D.S.; Hansel, F.A.: Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, 100719 (2021)

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48.

Zeitschriftenartikel

Pries, C.; Razaghi-Moghadam, Z.; Kopka, J.; Nikoloski, Z.: Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11 (1), 4787 (2021)

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49.

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Samo, N.; Ebert, A.; Kopka, J.; Mozgová, I.: Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, 102002 (2021)

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50.

Zeitschriftenartikel

Sangpong, L.; Khaksar, G.; Pinsorn, P.; Oikawa, A.; Sasaki, R.; Erban, A.; Watanabe, M.; Wangpaiboon, K.; Tohge, T.; Kopka, J. et al.; Hoefgen, R.; Saito, K.; Sirikantaramas, S.: Assessing dynamic changes of taste-related primary metabolism during ripening of durian pulp using metabolomic and transcriptomic analyses. Frontiers in Plant Science 12, 687799 (2021)

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51.

Zeitschriftenartikel

Schaarschmidt, S.; Lawas, L.M.F.; Kopka, J.; Jagadish, S. V. K.; Zuther, E.: Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 44 (7), S. 2034 - 2048 (2021)

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52.

Zeitschriftenartikel

Scheurer, N.; Rajarathinam, Y.; Timm, S.; Kobler, C.; Kopka, J.; Hagemann, M.; Wilde, A.: Homologs of circadian clock proteins impact the metabolic switch between light and dark growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 12, 675227 (2021)

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53.

Zeitschriftenartikel

Schumacher, C.; Krannich, C. T.; Maletzki, L.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Seddig, S.; Peters, R.; Hamera, S. et al.; Zuther, E.; Haas, M.; Horn, R.: Unravelling differences in candidate genes for drought tolerance in potato (Solanum tuberosum L.) by use of new functional microsatellite markers. Genes 12 (4), 494 (2021)

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54.

Zeitschriftenartikel

Schumacher, C.; Thümecke, S.; Schilling, F.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Walther, D.; Seddig, S.; Peters, R. et al.; Zuther, E.; Haas, M.; Horn, R.: Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 22 (11), 6123 (2021)

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55.

Zeitschriftenartikel

Takahashi, D.; Johnson, K.; Hao, P.; Tuong, T.; Erban, A.; Sampathkumar, A.; Bacic, A.; Livingston III, D. P.; Kopka, J.; Kuroha, T. et al.; Yokoyama, R.; Nishitani, K.; Zuther, E.; Hincha, D. K.: Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 44 (3), S. 915 - 930 (2021)

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56.

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Tedesco, S.; Erban, A.; Gupta, S.; Kopka, J.; Fevereiro, P.; Kragler, F.; Pina, A.: The impact of metabolic scion–rootstock interactions in different grapevine tissues and phloem exudates. Metabolites 11 (6), 349 (2021)

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57.

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Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

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58.

Zeitschriftenartikel

Firmino, A.; Gorka, M.; Graf, A.; Skirycz, A.; Martinez-Seidel, F.; Zander, K.; Kopka, J.; Beine-Golovchuk, O.: Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9 (7), 892 (2020)

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59.

Zeitschriftenartikel

Haas, M.; Sprenger, H.; Zuther, E.; Peters, R.; Seddig, S.; Walther, D.; Kopka, J.; Hincha, D. K.; Koehl, K. I.: Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 11, 1071 (2020)

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60.

Zeitschriftenartikel

Kalampokis, I.F.; Erban, A.; Amillis, S.; Diallinas, G.; Kopka, J.; Aliferis, K.A.: Untargeted metabolomics as a hypothesis-generation tool in plant protection product discovery: Highlighting the potential of trehalose and glycerol metabolism of fungal conidiospores as novel targets. Metabolomics 16 (7), 79 (2020)

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