Publikationen von Joachim Kopka
Zeitschriftenartikel (218)
1.
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36 (2), koad256, S. 404 - 426 (2024)
The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 2.
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Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology (2024)
3.
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14 (1), 5476 (2024)
Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports 4.
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176 (1), e14201 (2024)
Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum 5.
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51 (21), S. 11876 - 11892 (2023)
Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 6.
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201, 107862 (2023)
Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 7.
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142 (3), S. 372 - 387 (2023)
Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding 8.
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9, uhac217 (2022)
Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes. Horticulture Research 9.
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140, 109114 (2022)
Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 10.
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174 (4), e13746 (2022)
Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 11.
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174 (4), e13740 (2022)
Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 12.
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8 (5), 498 (2022)
The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi 13.
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8, S. 78 - 91 (2021)
Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 14.
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22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 15.
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22 (19), 10451 (2021)
Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 16.
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72 (18), S. 6544 - 6569 (2021)
Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 17.
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7 (9), 765 (2021)
Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 18.
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12, 697324 (2021)
Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 19.
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118 (1), S. 637 - 652 (2021)
Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 20.
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108 (4), S. 1213 - 1233 (2021)
Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 21.
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11 (1), 2410 (2021)
Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 22.
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44 (3), S. 870 - 884 (2021)
Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 23.
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22 (15), 8172 (2021)
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 24.
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4 (1), 181 (2021)
Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 25.
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22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 26.
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12, 656683 (2021)
Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 27.
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33, 100719 (2021)
Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 28.
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11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 29.
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61, 102002 (2021)
Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 30.
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12, 687799 (2021)
Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 31.
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44 (7), S. 2034 - 2048 (2021)
Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 32.
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12, 675227 (2021)
Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 33.
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12 (4), 494 (2021)
Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 34.
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22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 35.
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44 (3), S. 915 - 930 (2021)
Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 36.
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11 (6), 349 (2021)
The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 37.
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9, e54207 (2020)
Underground isoleucine biosynthesis pathways in E. coli. eLife 38.
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9 (7), 892 (2020)
Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 39.
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11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 40.
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16 (7), 79 (2020)
Untargeted metabolomics as a hypothesis-generation tool in plant protection product discovery: Highlighting the potential of trehalose and glycerol metabolism of fungal conidiospores as novel targets. Metabolomics 41.
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11, 948 (2020)
Systematic review of plant ribosome heterogeneity and specialization. Frontiers in Plant Science 42.
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10 (3), 121 (2020)
Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity. Metabolites 43.
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21 (9), 3187 (2020)
Season affects yield and metabolic profiles of rice (Oryza sativa) under high night temperature stress in the field. International Journal of Molecular Sciences 44.
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6, S. 1031 - 1043 (2020)
Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 45.
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11, 1118 (2020)
Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 46.
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8 (8), giz102 (2019)
Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field. GigaScience 47.
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8 (5), giz050 (2019)
Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions. GigaScience 48.
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180 (1), S. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 49.
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20 (19), 4665 (2019)
Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 50.
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10, 1617 (2019)
Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science 51.
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9 (1), 9697 (2019)
Discovery of food identity markers by metabolomics and machine learning technology. Scientific Reports 52.
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9 (6), 305 (2019)
Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 53.
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68 (12), S. 2272 - 2286 (2019)
Metabolomics identifies a biomarker revealing in vivo loss of functional β-cell mass before diabetes onset. Diabetes 54.
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72 (2), S. 195 - 202 (2019)
The metabolic response of suspension-cultured cells from blast-resistant and -susceptible rice (Oryza sativa L.) genotypes to a Pyricularia oryzae elicitor. Indian Phytopathology 55.
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144, S. 100 - 109 (2019)
The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species. Plant Physiology and Biochemistry 56.
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42 (1-SI), S. 295 - 309 (2019)
Ion-dependent metabolic responses of Vicia faba L. to salt stress. Plant, Cell and Environment 57.
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10, 106 (2019)
Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information? Frontiers in Plant Science 58.
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9 (1), 2289 (2019)
Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 59.
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63 (1-SI), 1800384 (2019)
Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies. Molecular Nutriton & Food Research 60.
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21 (SI suppl.), S. 109 - 119 (2019)
Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana. Plant Biology