Publications of Joachim Kopka
Journal Article (228)
1.
Journal Article
211 (2), e70049 (2025)
Guard Cell-Specific Metabolic Responses to Drought Stress in Maize. Journal of Environmental Quality 2.
Journal Article
380 (1921), 20230384 (2025)
Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 3.
Journal Article
220, 109585 (2025)
Polyamines and flg22 reshape the ribosomal protein composition of actively translating ribosomes in plants. Plant Physiology and Biochemistry 4.
Journal Article
197 (2), kiaf020 (2025)
Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology 5.
Journal Article
217, 109262 (2024)
Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 6.
Journal Article
36 (12), pp. 4862 - 4880 (2024)
Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 7.
Journal Article
40, 100378 (2024)
Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 8.
Journal Article
14 (10), 562 (2024)
Detailed Profiling of 17-Hydroxygeranyllinalool Diterpene Glycosides from Nicotiana Species Reveals Complex Reaction Networks of Conjugation Isomers. Metabolites 9.
Journal Article
34 (12), pp. 2702 - 2711.e6 (2024)
Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology 10.
Journal Article
14 (9), e4981 (2024)
Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio-protocol 11.
Journal Article
36 (2), koad256, pp. 404 - 426 (2024)
The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 12.
Journal Article
Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology (2024)
13.
Journal Article
14 (1), 5476 (2024)
Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports 14.
Journal Article
176 (1), e14201 (2024)
Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum 15.
Journal Article
51 (21), pp. 11876 - 11892 (2023)
Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 16.
Journal Article
201, 107862 (2023)
Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 17.
Journal Article
142 (3), pp. 372 - 387 (2023)
Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding 18.
Journal Article
9, uhac217 (2022)
Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes. Horticulture Research 19.
Journal Article
140, 109114 (2022)
Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 20.
Journal Article
174 (4), e13746 (2022)
Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 21.
Journal Article
174 (4), e13740 (2022)
Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 22.
Journal Article
8 (5), 498 (2022)
The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi 23.
Journal Article
8, pp. 78 - 91 (2021)
Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 24.
Journal Article
22, 605 (2021)
COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 25.
Journal Article
22 (19), 10451 (2021)
Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 26.
Journal Article
72 (18), pp. 6544 - 6569 (2021)
Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 27.
Journal Article
7 (9), 765 (2021)
Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 28.
Journal Article
12, 697324 (2021)
Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 29.
Journal Article
118 (1), pp. 637 - 652 (2021)
Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 30.
Journal Article
108 (4), pp. 1213 - 1233 (2021)
Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 31.
Journal Article
11 (1), 2410 (2021)
Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 32.
Journal Article
44 (3), pp. 870 - 884 (2021)
Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 33.
Journal Article
22 (15), 8172 (2021)
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 34.
Journal Article
4 (1), 181 (2021)
Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 35.
Journal Article
22 (11), 6160 (2021)
Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 36.
Journal Article
12, 656683 (2021)
Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 37.
Journal Article
33, 100719 (2021)
Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 38.
Journal Article
11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 39.
Journal Article
61, 102002 (2021)
Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 40.
Journal Article
12, 687799 (2021)
Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 41.
Journal Article
44 (7), pp. 2034 - 2048 (2021)
Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 42.
Journal Article
12, 675227 (2021)
Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 43.
Journal Article
12 (4), 494 (2021)
Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 44.
Journal Article
22 (11), 6123 (2021)
Genome-wide approach to identify quantitative trait loci for drought tolerance in tetraploid potato (Solanum tuberosum L.). International Journal of Molecular Sciences 45.
Journal Article
44 (3), pp. 915 - 930 (2021)
Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 46.
Journal Article
11 (6), 349 (2021)
The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 47.
Journal Article
9, e54207 (2020)
Underground isoleucine biosynthesis pathways in E. coli. eLife 48.
Journal Article
9 (7), 892 (2020)
Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 49.
Journal Article
11, 1071 (2020)
Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 50.
Journal Article
16 (7), 79 (2020)
Untargeted metabolomics as a hypothesis-generation tool in plant protection product discovery: Highlighting the potential of trehalose and glycerol metabolism of fungal conidiospores as novel targets. Metabolomics 51.
Journal Article
11, 948 (2020)
Systematic review of plant ribosome heterogeneity and specialization. Frontiers in Plant Science 52.
Journal Article
10 (3), 121 (2020)
Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity. Metabolites 53.
Journal Article
21 (9), 3187 (2020)
Season affects yield and metabolic profiles of rice (Oryza sativa) under high night temperature stress in the field. International Journal of Molecular Sciences 54.
Journal Article
6, pp. 1031 - 1043 (2020)
Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 55.
Journal Article
11, 1118 (2020)
Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 56.
Journal Article
8 (8), giz102 (2019)
Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field. GigaScience 57.
Journal Article
8 (5), giz050 (2019)
Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions. GigaScience 58.
Journal Article
180 (1), pp. 654 - 681 (2019)
Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 59.
Journal Article
20 (19), 4665 (2019)
Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 60.
Journal Article
10, 1617 (2019)
Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science