Publications of D. Steinhauser

Journal Article (33)

21.
Journal Article
Usadel, B., Obayashi, T., Mutwil, M., Giorgi, F. M., Bassel, G. W., Tanimoto, M., Chow, A., Steinhauser, D., Persson, S. & Provart, N. J. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell and Environment 32, 1633–1651 (2009).
22.
Journal Article
Falkenberg, B., Witt, I., Zanor, M. I., Steinhauser, D., Mueller-Roeber, B., Hesse, H. & Hoefgen, R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59, 2831–2846 (2008).
23.
Journal Article
Hummel, J., Niemann, M., Wienkoop, S., Schulze, W., Steinhauser, D., Selbig, J., Walther, D. & Weckwerth, W. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, 216 (2007).
24.
Journal Article
Junker, B. H., Wuttke, R., Nunes-Nesi, A., Steinhauser, D., Schauer, N., Buessis, D., Willmitzer, L. & Fernie, A. R. Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47, 277–289 (2006).
25.
Journal Article
Usadel, B., Nagel, A., Steinhauser, D., Gibon, Y., Blaesing, O. E., Redestig, H., Sreenivasulu, N., Krall, L., Hannah, M. A., Poree, F., Fernie, A. R. & Stitt, M. PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, 535 (2006).
26.
Journal Article
Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmueller, E., Doermann, P., Weckwerth, W., Gibon, Y., Stitt, M., Willmitzer, L., Fernie, A. R. & Steinhauser, D. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21, 1635–1638 (2005).
27.
Journal Article
Lisso, J., Steinhauser, D., Altmann, T., Kopka, J. & Muessig, C. Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33, 2685–2696 (2005).
28.
Journal Article
Rautengarten, C., Steinhauser, D., Buessis, D., Stintzi, A., Schaller, A., Kopka, J. & Altmann, T. Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1, e40 (2005).
29.
Journal Article
Schauer, N., Steinhauser, D., Strelkov, S., Schomburg, D., Allison, G., Moritz, T., Lundgren, K., Roessner-Tunali, U., Forbes, M. G., Willmitzer, L., Fernie, A. R. & Kopka, J. GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579, 1332–1337 (2005).
30.
Journal Article
Usadel, B., Kuschinsky, A. M., Steinhauser, D. & Pauly, M. Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139, 69–73 (2005).
31.
Journal Article
Usadel, B., Nagel, A., Thimm, O., Redestig, H., Bläsing, O. E., Palacios-Rojas, N., Selbig, J., Hannemann, J., Piques, M. C., Steinhauser, D., Scheible, W.-R., Gibon, Y., Morcuende, R., Weicht, D., Meyer, S. & Stitt, M. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138, 1195–1204 (2005).
32.
Journal Article
Steinhauser, D., Junker, B. H., Luedemann, A., Selbig, J. & Kopka, J. Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20, 1928–1939 (2004).
33.
Journal Article
Steinhauser, D., Usadel, B., Luedemann, A., Thimm, O. & Kopka, J. CSB.DB: a comprehensive systems-biology database. Bioinformatics 20, 3647–3651 (2004).

Book Chapter (7)

34.
Book Chapter
Krueger, S., Steinhauser, D., Lisec, J. & Giavalisco, P. in Arabidopsis Protocols, 3rd Edition 575–596 (Humana Press, 2014). doi:10.1007/978-1-62703-580-4_30
35.
Book Chapter
Ogata, Y., Sakurai, N., Provart, N. J., Steinhauser, D. & Krall, L. in The Handbook of Plant Functional Genomics: Concepts and Protocols (eds. Kahl, G. & Meksem, K.) (Wiley, 2008). doi:10.1002/9783527622542.ch15
36.
Book Chapter
Steinhauser, D., Krall, L., Müssig, C., Büssis, D. & Usadel, B. in Analysis of Biological Networks (eds. Junker, B. H., Schreiber, F. & Zomaya, A. Y.) (Wiley, 2008). doi:10.1002/9780470253489.ch13
37.
Book Chapter
Dolch, D., Batsaikhan, N., Thiele, K., Burger, F., Scheffler, I., Kiefer, A., Mayer, F., Samjaa, R., Stubbe, A., Stubbe, M., Krall, L. & Steinhauser, D. in Schriftenreihe der Martin-Luther Universität Halle 10, 407–458 (2007).
38.
Book Chapter
Steinhauser, D. & Kopka, J. in Plant Systems Biology (eds. Baginsky, S. & Fernie, A. R.) 171–194 (Verlag Birkhäuser, 2007). at <http://hdl.handle.net/11858/00-001M-0000-0014-2861-F>
39.
Book Chapter
Steinhauser, D. & Usadel, B. in Plant Genomics and Bioinformatics Expression Micro Arrays and Beyond - a course book (ed. Freitag, J.) 190–192 (MPI-MP, 2006). at <http://hdl.handle.net/11858/00-001M-0000-0014-29BE-C>
40.
Book Chapter
Desbrosses, G., Steinhauser, D., Kopka, J. & Udvardi, M. K. in Lotus japonicus handbook (eds. Marquez, A. J., Stougaard, J., Udvardi, M., Parniske, M., Spaink, H. P., Saalbach, G., Webb, J. S. & Chiurazzi, M.) 165–174 (Kluwer, 2005). at <http://hdl.handle.net/11858/00-001M-0000-0014-2BF8-5>
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