Publications of the Group

Journal Article (399)

1.
Journal Article
Apelt, F.; Mavrothalassiti, E.; Gupta, S.; Machin, F.; Olas, J. J.; Annunziata, M. G.; Schindelasch, D.; Kragler, F.: Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles. Plant Physiology (2021)
2.
Journal Article
Gabriel, C.; Fernhout, J.-J.; Fichtner, F.; Feil, R.; Lunn, J. E.; Kossmann, J.; Lloyd, J. R.; van der Vyver, C.: Genetic manipulation of trehalose-6-phosphate synthase results in changes in the soluble sugar profile in transgenic sugarcane stems. Plant Direct 5 (11), e358 (2021)
3.
Journal Article
Muralidhara, P.; Weiste, C.; Collani, S.; Krischke, M.; Kreisz, P.; Draken, J.; Feil, R.; Mair, A.; Teige, M.; Müller, M. J. et al.; Schmid, M.; Becker, D.; Lunn, J. E.; Rolland, F.; Hanson, J.; Dröge-Laser, W.: Perturbations in plant energy homeostasis prime lateral root initiation via SnRK1-bZIP63-ARF19 signaling. Proceedings of the National Academy of Sciences of the United States of America 118 (37), e2106961118 (2021)
4.
Journal Article
Olas, J. J.; Apelt, F.; Annunziata, M. G.; John, S.; Richard, S. I.; Gupta, S.; Kragler, F.; Balazadeh, S.; Mueller-Roeber, B.: Primary carbohydrate metabolism genes participate in heat stress memory at the shoot apical meristem of Arabidopsis thaliana. Molecular Plant 14, pp. 1508 - 1524 (2021)
5.
Journal Article
Hancock, R. D.; Smirnoff, N.; Lunn, J. E.: Journal of Experimental Botany 70th anniversary: plant metabolism in a changing world. Journal of Experimental Botany 72 (17), pp. 5939 - 5941 (2021)
6.
Journal Article
Stitt, M.; Borghi, G.L.; Arrivault, S.: Targeted Metabolite Profiling as a Top-Down Approach to Uncover Inter-Species Diversity and Identify Key Conserved Operational Features in the Calvin-Benson cycle. Journal of Experimental Botany 72 (17), pp. 5961 - 5986 (2021)
7.
Journal Article
Peixoto, B.; Moraes, T. A.; Mengin, V.; Margalha, L.; Vicente, R.; Feil, R.; Höhne, M.; Sousa, A. G. G.; Lilue, J.; Stitt, M. et al.; Lunn, J. E.; Baena-González, E.: Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle. Plant Physiology 187 (3), pp. 1357 - 1373 (2021)
8.
Journal Article
Moreno, J.C.; Rojas, B.E.; Vicente, R.; Gorka, M.; Matz, T.; Kosmacz, M.; Peralta-Ariza, J.S.; Zhang, Y.; Alseekh, S.; Childs, D. et al.; Luzarowski, M.; Nikoloski, Z.; Zarivach, R.; Walther, D.; Hartman, M.D.; Figueroa, C.M.; Iglesias, A.A.; Fernie, A. R.; Skirycz, A.: Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal, e106800 (2021)
9.
Journal Article
Ishihara, H.; Moraes, T. A.; Arrivault, S.; Stitt, M.: Assessing Protein Synthesis and Degradation Rates in Arabidopsis thaliana Using Amino Acid Analysis. Current Protocols 1 (5), e114 (2021)
10.
Journal Article
Zhang, Y.; Giese, J.; Kerbler, S.M.-L.; Siemiatkowska, B.; de Souza, L. P.; Alpers, J.; Medeiros, D.B.; Hincha, D. K.; Daloso, D. M.; Stitt, M. et al.; Finkemeier, I.; Fernie, A. R.: Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14 (7), pp. 1104 - 1118 (2021)
11.
Journal Article
Fichtner, F.; Lunn, J. E.: The Role of Trehalose 6-Phosphate (Tre6P) in Plant Metabolism and Development. Annual Review of Plant Biology 72, pp. 737 - 760 (2021)
12.
Journal Article
Avidan, O.; Malitsky, S.; Pick, U.: Fatty Acid Production and Direct Acyl Transfer through Polar Lipids Control TAG Biosynthesis during Nitrogen Deprivation in the Halotolerant Alga Dunaliella tertiolecta. Marine Drugs 19 (7), 368 (2021)
13.
Journal Article
Caroca, R.; Howell, K. A.; Malinova, I.; Burgos, A.; Tiller, N.; Pellizzer, T.; Annunziata, M. G.; Hasse, C.; Ruf, S.; Karcher, D. et al.; Bock, R.: Knock-down of the plastid-encoded acetyl-CoA carboxylase gene uncovers functions in metabolism and development. Plant Physiology 185 (3), pp. 1091 - 1110 (2021)
14.
Journal Article
Fichtner, F.; Barbier, F. F.; Annunziata, M. G.; Feil, R.; Olas, J. J.; Mueller-Roeber, B.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Regulation of shoot branching in Arabidopsis by trehalose 6-phosphate. New Phytologist 229 (4), pp. 2135 - 2151 (2021)
15.
Journal Article
Julca, I.; Ferrari, C.; Flores-Tornero, M.; Proost, S.; Lindner, A.-C.; Hackenberg, D.; Steinbachová, L.; Michaelidis, C.; Gomes Pereira, S.; Misra, C. S. et al.; Kawashima, T.; Borg, M.; Berger, F.; Goldberg, J.; Johnson, M.; Honys, D.; Twell, D.; Sprunck, S.; Dresselhaus, T.; Becker, J. D.; Mutwil, M.: Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, pp. 1143 - 1159 (2021)
16.
Journal Article
Krahmer, J.; Abbas, A.; Mengin, V.; Ishihara, H.; Romanowski, A.; Furniss, J. J.; Moraes, T. A.; Krohn, N.; Annunziata, M. G.; Feil, R. et al.; Alseekh, S.; Obata, T.; Fernie, A. R.; Stitt, M.; Halliday, K. J.: Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72 (8), pp. 3263 - 3278 (2021)
17.
Journal Article
Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)
18.
Journal Article
McFarlane, H. E.; Mutwil-Anderwald, D.; Verbančič, J.; Picard, K.L.; Gookin, T.E.; Fröhlich, A.; Chakravorty, D.; Trindade, L.M.; Alonso, J.M.; Assmann, S.M. et al.; Persson, S.: A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis. Developmental Cell 56 (10), pp. 1484 - 1497.e7 (2021)
19.
Journal Article
Meitzel, T.; Radchuk, R.; McAdam, E.L.; Thormählen, I.; Feil, R.; Munz, E.; Hilo, A.; Geigenberger, P.; Ross, J.J.; Lunn, J. E. et al.; Borisjuk, L.: Trehalose 6-phosphate promotes seed filling by activating auxin biosynthesis. New Phytologist 229 (3), pp. 1553 - 1565 (2021)
20.
Journal Article
Olas, J. J.; Apelt, F.; Watanabe, M.; Hoefgen, R.; Wahl, V.: Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation. Plant Science 303, 110746 (2021)
21.
Journal Article
Paterlini, A.; Dorussen, D.; Fichtner, F.; van Rongen, M.; Delacruz, R.; Vojnović, A.; Helariutta, Y.; Leyser, O.: Callose accumulation in specific phloem cell types reduces axillary bud growth in Arabidopsis thaliana. New Phytologist 231 (2), pp. 516 - 523 (2021)
22.
Journal Article
Pérez-Díaz, J.; Batista-Silva, W.; Almada, R.; Medeiros, D. B.; Arrivault, S.; Correa, F.; Bastías, A.; Rojas, P.; Beltrán, M. F.; Pozo, M. F. et al.; Araújo, W. L.; Sagredo, B.: Prunus Hexokinase 3 genes alter primary C-metabolism and promote drought and salt stress tolerance in Arabidopsis transgenic plants. Scientific Reports 11, 7098 (2021)
23.
Journal Article
Zhai, Z.; Keereetaweep, J.; Liu, H.; Feil, R.; Lunn, J. E.; Shanklin, J.: Expression of a Bacterial Trehalose-6-phosphate Synthase otsA Increases Oil Accumulation in Plant Seeds and Vegetative Tissues. Frontiers in Plant Science 12, 656962 (2021)
24.
Journal Article
Pignocchi, C.; Ivakov, A.; Feil, R.; Trick, M.; Pike, M.; Wang, T. L.; Lunn, J. E.; Smith, A. M.: Restriction of cytosolic sucrose hydrolysis profoundly alters development, metabolism and gene expression in Arabidopsis roots. Journal of Experimental Botany 72 (5), pp. 1850 - 1863 (2020)
25.
Journal Article
Davies, B.; Roberts, J.; Raines, C.; Lunn, J. E.: Retirement of Mary Traynor, executive editor of JXB (1995–2020). Journal of Experimental Botany 71 (19), pp. 5719 - 5720 (2020)
26.
Journal Article
Baena-González, E.; Lunn, J. E.: SnRK1 and trehalose 6-phosphate – two ancient pathways converge to regulate plant metabolism and growth. Current Opinion in Plant Biology 55, pp. 52 - 59 (2020)
27.
Journal Article
Ermakova, M.; Arrivault, S.; Giuliani, R.; Danila, F.; Alonso-Cantabrana, H.; Vlad, D.; Ishihara, H.; Feil, R.; Guenther, M.; Borghi, G.L. et al.; Covshoff, S.; Ludwig, M.; Cousins, A.B.; Langdale, J.A.; Kelly, S.; Lunn, J. E.; Stitt, M.; von Caemmerer, S.; Furbank, R.T.: Installation of C4 photosynthetic pathway enzymes in rice using a single construct. Plant Biotechnology Journal 19 (3), pp. 575 - 588 (2020)
28.
Journal Article
Estévez-Geffriaud, V.; Vicente, R.; Vergara-Díaz, O.; Narváez Reinaldo, J.J.; Trillas, M.I.: Application of Trichoderma asperellum T34 on maize (Zea mays) seeds protects against drought stress. Planta 252 (1), 8 (2020)
29.
Journal Article
Fernie, A. R.; Bachem, C.W.B.; Helariutta, Y.; Neuhaus, H.E.; Prat, S.; Ruan, Y.-L.; Stitt, M.; Sweetlove, L.J.; Tegeder, M.; Wahl, V. et al.; Sonnewald, S.; Sonnewald, U.: Synchronization of developmental, molecular and metabolic aspects of source–sink interactions. Nature Plants 6, pp. 55 - 66 (2020)
30.
Journal Article
Ferrari, C.; Shivhare, D.; Hansen, B. O.; Pasha, A.; Esteban, E.; Provart, N. J.; Kragler, F.; Fernie, A. R.; Tohge, T.; Mutwil, M.: Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. The Plant Cell 32 (4), pp. 853 - 870 (2020)
31.
Journal Article
Ferrari, C.; Mutwil, M.: Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants. New Phytologist 225 (4), pp. 1562 - 1577 (2020)
32.
Journal Article
Fichtner, F.; Olas, J. J.; Feil, R.; Watanabe, M.; Krause, U.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Functional features of TREHALOSE-6-PHOSPHATE SYNTHASE1 - an essential enzyme in Arabidopsis thaliana. The Plant Cell 32 (6), pp. 1949 - 1972 (2020)
33.
Journal Article
Hammel, A.; Sommer, F.; Zimmer, D.; Stitt, M.; Mühlhaus, T.; Schroda, M.: Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes. Frontiers in Plant Science 11, 868 (2020)
34.
Journal Article
Lecourieux, D.; Kappel, C.; Claverol, S.; Pieri, P.; Feil, R.; Lunn, J. E.; Bonneu, M.; Wang, L.; Gomès, E.; Delrot, S. et al.; Lecourieux, F.: Proteomic and metabolomic profiling underlines the stage- and time-dependent effects of high temperature on grape berry metabolism. Journal of Integrative Plant Biology 62 (8), pp. 1132 - 1158 (2020)
35.
Journal Article
Lin, H.; Arrivault, S.; Coe, R. A.; Karki, S.; Covshoff, S.; Bagunu, E.; Lunn, J. E.; Stitt, M.; Furbank, R. T.; Hibberd, J. M. et al.; Quick, W. P.: A Partial C4 Photosynthetic Biochemical Pathway in Rice. Frontiers in Plant Science 11, 564463 (2020)
36.
Journal Article
Li, X.; Sanagi, M.; Lu, Y.; Nomura, Y.; Stolze, S.C.; Yasuda, S.; Saijo, Y.; Schulze, W.X.; Feil, R.; Stitt, M. et al.; Lunn, J. E.; Nakagami, H.; Sato, T.; Yamaguchi, J.: Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis. Frontiers in Plant Scienc 11, 377 (2020)
37.
Journal Article
Moreno Curtidor, C.; Annunziata, M. G.; Gupta, S.; Apelt, F.; Richard, S. I.; Kragler, F.; Mueller-Roeber, B.; Olas, J. J.: Physiological Profiling of Embryos and Dormant Seeds in Two Arabidopsis Accessions Reveals a Metabolic Switch in Carbon Reserve Accumulation. Frontiers in Plant Science 11, 588433 (2020)
38.
Journal Article
Nardozza, S.; Boldingh, H. L.; Kashuba, P.; Feil, R.; Jones, D.; Thrimawithana, A. H.; Ireland, H. S.; Philippe, M.; Wohlers, M. W.; McGhie, T. et al.; Montefiori, M.; Lunn, J. E.; Allan, A.; Richardson, A. C.: Carbon starvation reduces carbohydrate and anthocyanin accumulation in red-fleshed fruit via trehalose 6-phosphate and MYB27. Plant, Cell and Environment 43 (4), pp. 819 - 835 (2020)
39.
Journal Article
Ng, J.W.X.; Tan, Q.W.; Ferrari, C.; Mutwil, M.: Diurnal.plant.tools: Comparative Transcriptomic and Co-expression Analyses of Diurnal Gene Expression of the Archaeplastida Kingdom. Plant and Cell Physiology 61 (1), pp. 212 - 220 (2020)
40.
Journal Article
Obata, T.; Klemens, P.A.W.; Rosado-Souza, L.; Schlereth, A.; Gisel, A.; Stavolone, L.; Zierer, W.; Morales, N.; Mueller, L.A.; Zeeman, S.C. et al.; Ludewig, F.; Stitt, M.; Sonnewald, U.; Neuhaus, H.E.; Fernie, A. R.: Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield. The Plant Journal 102 (6), pp. 1202 - 1219 (2020)
41.
Journal Article
Olas, J. J.; Fichtner, F.; Apelt, F.: All roads lead to growth: imaging-based and biochemical methods to measure plant growth. Journal of Experimental Botany 71 (1), pp. 11 - 21 (2020)
42.
Journal Article
Ponnu, J.; Schlereth, A.; Zacharaki, V.; Dzialo, M.; Abel, C.; Feil, R.; Schmid, M.; Wahl, V.: The Trehalose 6-Phosphate Pathway Impacts Vegetative Phase Change in Arabidopsis thaliana. The Plant Journal (accepted)
43.
Journal Article
Sanchez-Bragado, R.; Vicente, R.; Molero, G.; Serret, M.D.; Maydup, M.L.; Araus, J.L.: New avenues for increasing yield and stability in C3 cereals: exploring ear photosynthesis. Current Opinion in Plant Biology 56, pp. 223 - 234 (2020)
44.
Journal Article
Treves, H.; Siemiatkowska, B.; Luzarowska, U.; Murik, O.; Fernandez-Pozo, N.; Moraes, T. A.; Erban, A.; Armbruster, U.; Brotman, Y.; Kopka, J. et al.; Rensing, S. A.; Szymanski, J.; Stitt, M.: Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 6, pp. 1031 - 1043 (2020)
45.
Journal Article
Vaid, N.; Ishihara, H.; Plötner, B.; Sageman-Furnas, K.; Wiszniewski, A.A.G.; Laitinen, R.: Leaf chlorosis in Arabidopsis thaliana hybrids is associated with transgenerational decline and imbalanced ribosome number. New Phytologist 228 (3), pp. 989 - 1000 (2020)
46.
Journal Article
Vergara-Diaz, O.; Vatter, T.; Vicente, R.; Obata, T.; Nieto-Taladriz, M.T.; Aparicio, N.; Carlisle Kefauver, S.; Fernie, A. R.; Araus, J.L.: Metabolome Profiling Supports the Key Role of the Spike in Wheat Yield Performance. Cells 9 (4), 1025 (2020)
47.
Journal Article
Wang, Y.; Wang, L.; Micallef, B. J.; Tetlow, I. J.; Mullen, R. T.; Feil, R.; Lunn, J. E.; Emes, M. J.: AKINβ1, a regulatory subunit of SnRK1, regulates organic acid metabolism and acts as a global regulator of genes involved in carbon, lipid and nitrogen metabolism. Journal of Experimental Botany 71 (3), pp. 1010 - 1028 (2020)
48.
Journal Article
Zhang, Y.; Sampathkumar, A.; Kerbler, S.M.-L.; Swart, C.; Hille, C.; Seerangan, K.; Graf, A.; Sweetlove, L.; Fernie, A. R.: A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. Nature Communications 11 (1), 4509 (2020)
49.
Journal Article
Ceusters, N.; Luca, S.; Feil, R.; Claes, J. E.; Lunn, J. E.; Van den Ende, W.; Ceusters, J.: Hierarchical clustering reveals unique features in the diel dynamics of metabolites in the CAM orchid Phalaenopsis. Journal of Experimental Botany 70 (12), pp. 3269 - 3281 (2019)
50.
Journal Article
Moraes, T. A.; Mengin, V.; Annunziata, M. G.; Encke, B.; Krohn, N.; Höhne, M.; Stitt, M.: Response of the Circadian Clock and Diel Starch Turnover to One Day of Low Light or Low CO2. Plant Physiology 179 (4), pp. 1457 - 1478 (2019)
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