Journal Article (404)

351.
Journal Article
Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)
352.
Journal Article
Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)
353.
Journal Article
Zrenner, R.; Stitt, M.; Sonnewald, U.; Boldt, R.: Pyrimidine and Purine Biosynthesis and Degradation in Plants. Annual Review of Plant Biology 57, pp. 805 - 836 (2006)
354.
Journal Article
Blaesing, O. E.; Gibon, Y.; Guenther, M.; Hoehne, M.; Morcuende, R.; Osuna, D.; Thimm, O.; Usadel, B.; Scheible, W.-R.; Stitt, M.: Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17 (12), pp. 3257 - 3281 (2005)
355.
Journal Article
Carrari, F.; Coll-Garcia, D.; Schauer, N.; Lytovchenko, A.; Palacios-Rojas, N.; Balbo, I.; Rosso, M.; Fernie, A. R.: Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137 (1), pp. 70 - 82 (2005)
356.
Journal Article
Czechowski, T.; Stitt, M.; Altmann, T.; Udvardi, M. K.; Scheible, W.-R.: Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology 139 (1), pp. 5 - 17 (2005)
357.
Journal Article
Fernie, A. R.; Geigenberger, P.; Stitt, M.: Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8 (2), pp. 174 - 182 (2005)
358.
Journal Article
Fieulaine, S.; Lunn, J. E.; Borel, F.; Ferrer, J. L.: The structure of a cyanobacterial sucrose-phosphatase reveals the sugar tongs that release free sucrose in the cell. Plant Cell 17 (7), pp. 2049 - 2058 (2005)
359.
Journal Article
Kanter, U.; Usadel, B.; Guerineau, F.; Li, Y.; Pauly, M.; Tenhaken, R.: The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221 (2), pp. 243 - 254 (2005)
360.
Journal Article
Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)
361.
Journal Article
Repsilber, D.; Fink, L.; Jacobsen, M.; Blasing, O.; Ziegler, A.: Sample selection for microarray gene expression studies. Methods of Information in Medicine 44 (3), pp. 461 - 467 (2005)
362.
Journal Article
Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)
363.
Journal Article
Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)
364.
Journal Article
Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)
365.
Journal Article
Bender-Machado, L.; Bauerlein, M.; Carrari, F.; Schauer, N.; Lytovchenko, A.; Gibon, Y.; Kelly, A. A.; Loureiro, M. E.; Muller-Rober, B.; Willmitzer, L. et al.; Fernie, A. R.: Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Molecular Biology 55 (5), pp. 645 - 662 (2004)
366.
Journal Article
Castleden, C. K.; Aoki, N.; Gillespie, V. J.; MacRae, E. A.; Quick, W. P.; Buchner, P.; Foyer, C. H.; Furbank, R. T.; Lunn, J. E.: Evolution and function of the sucrose-phosphate synthase gene families in wheat and other grasses. Plant Physiology 135 (3), pp. 1753 - 1764 (2004)
367.
Journal Article
Czechowski, T.; Bari, R. P.; Stitt, M.; Scheible, W.-R.; Udvardi, M. K.: Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant Journal 38 (2), pp. 366 - 379 (2004)
368.
Journal Article
Geigenberger, P.; Stitt, M.; Fernie, A. R.: Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers. Plant Cell and Environment 27 (6), pp. 655 - 673 (2004)
369.
Journal Article
Gibon, Y.; Blaesing, O. E.; Hannemann, J.; Carillo, P.; Hoehne, M.; Hendriks, J. H. M.; Palacios, N.; Cross, J.; Selbig, J.; Stitt, M.: A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16 (12), pp. 3304 - 3325 (2004)
370.
Journal Article
Gibon, Y.; Blaesing, O. E.; Palacios-Rojas, N.; Pankovic, D.; Hendriks, J. H. M.; Fisahn, J.; Hoehne, M.; Guenther, M.; Stitt, M.: Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant Journal 39 (6), pp. 847 - 862 (2004)
371.
Journal Article
Lein, W.; Bornke, F.; Reindl, A.; Ehrhardt, T.; Stitt, M.; Sonnewald, U.: Target-based discovery of novel herbicides. Current Opinion in Plant Biology 7 (2), pp. 219 - 225 (2004)
372.
Journal Article
Scheible, W.-R.; Morcuende, R.; Czechowski, T.; Fritz, C.; Osuna, D.; Palacios-Rojas, N.; Schindelasch, D.; Thimm, O.; Udvardi, M. K.; Stitt, M.: Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology 136 (1), pp. 2483 - 2499 (2004)
373.
Journal Article
Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), pp. 3647 - 3651 (2004)
374.
Journal Article
Thimm, O.; Blaesing, O.; Gibon, Y.; Nagel, A.; Meyer, S.; Krueger, P.; Selbig, J.; Mueller, L. A.; Rhee, S. Y.; Stitt, M.: MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37 (6), pp. 914 - 939 (2004)
375.
Journal Article
Trevanion, S. J.; Castleden, C. K.; Foyer, C. H.; Furbank, R. T.; Quick, W. P.; Lunn, J. E.: Regulation of sucrose-phosphate synthase in wheat (Triticum aestivum) leaves. Functional Plant Biology 31 (7), pp. 685 - 695 (2004)
376.
Journal Article
Usadel, B.; Kuschinsky, A. M.; Rosso, M. G.; Eckermann, N.; Pauly, M.: RHM2 is involved in mucilage pectin synthesis and is required for the development of the seed coat in Arabidopsis. Plant Physiology 134 (1), pp. 286 - 295 (2004)
377.
Journal Article
Usadel, B.; Schluter, U.; Molhoj, M.; Gipmans, M.; Verma, R.; Kossmann, J.; Reiter, W. D.; Pauly, M.: Identification and characterization of a UDP-D-glucuronate 4-epimerase in Arabidopsis. FEBS Letters 569 (1-3), pp. 327 - 331 (2004)
378.
Journal Article
Zuther, E.; Buchel, K.; Hundertmark, M.; Stitt, M.; Hincha, D. K.; Heyer, A. G.: The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Letters 576 (1-2), pp. 169 - 173 (2004)
379.
Journal Article
Carrari, F.; Nunes-Nesi, A.; Gibon, Y.; Lytovchenko, A.; Loureiro, M. E.; Fernie, A. R.: Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiology 133 (3), pp. 1322 - 1335 (2003)
380.
Journal Article
Hendriks, J. H. M.; Kolbe, A.; Gibon, Y.; Stitt, M.; Geigenberger, P.: ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species. Plant Physiology 133 (2), pp. 838 - 849 (2003)
381.
Journal Article
Lunn, J. E.: Sucrose-phosphatase gene families in plants. Gene 303, pp. 187 - 196 (2003)
382.
Journal Article
Lunn, J. E.; Gillespie, V. J.; Furbank, R. T.: Express-ion of a cyanobacterial sucrose-phosphate synthase from Synechocystis sp PCC 6803 in transgenic plants. Journal of Experimental Botany 54 (381), pp. 223 - 237 (2003)
383.
Journal Article
Lunn, J. E.; MacRae, E.: New complexities in the synthesis of sucrose. Current Opinion in Plant Biology 6 (3), pp. 208 - 214 (2003)
384.
Journal Article
Stitt, M.; Blaesing, O.; Gibon, Y.; Thimm, O.; Scheible, W.-R.: Das Problem der Fuelle. Funktionelle Genomik von Kohlenhydrat- und Stickstoff-Stoffwechsel in Arabidopsis. GenomXpress 3, pp. 2 - 5 (2003)
385.
Journal Article
Stitt, M.; Fernie, A. R.: From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Biotechnology 14 (2), pp. 136 - 144 (2003)
386.
Journal Article
Tiessen, A.; Prescha, K.; Branscheid, A.; Palacios, N.; McKibbin, R.; Halford, N. G.; Geigenberger, P.: Evidence that SNF1-related kinase and hexokinase are involved in separate sugar-signalling pathways modulating post-translational redox activation of ADP-glucose pyrophosphorylase in potato tubers. Plant Journal 35 (4), pp. 490 - 500 (2003)
387.
Journal Article
Fernie, A. R.; Tiessen, A.; Stitt, M.; Willmitzer, L.; Geigenberger, P.: Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase-expressing potato tubers. Plant Cell and Environment 25 (10), pp. 1219 - 1232 (2002)
388.
Journal Article
Gibon, Y.; Vigeolas, H.; Tiessen, A.; Geigenberger, P.; Stitt, M.: Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system. Plant Journal 30 (2), pp. 221 - 235 (2002)
389.
Journal Article
Matt, P.; Krapp, A.; Haake, V.; Mock, H.-P.; Stitt, M.: Decreased Rubisco activity leads to dramatic changes of nitrate metabolism, amino acid metabolism and the levels of phenylpropanoids and nicotine in tobacco antisense RBCS transformants. Plant Journal 30 (6), pp. 663 - 677 (2002)
390.
Journal Article
Stitt, M.; Hurry, V.: A plant for all seasons: alterations in photosynthetic carbon metabolism during cold acclimation in Arabidopsis. Current Opinion in Plant Biology 5 (3), pp. 199 - 206 (2002)
391.
Journal Article
Stitt, M.; Hurry, V.: Plant odyssey - Adaptation of plants to cold. Biofutur (224), pp. 18 - 21 (2002)
392.
Journal Article
Tiessen, A.; Hendriks, J. H. M.; Stitt, M.; Branscheid, A.; Gibon, Y.; Farre, E. M.; Geigenberger, P.: Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: A novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell 14 (9), pp. 2191 - 2213 (2002)
393.
Journal Article
Henkes, S.; Sonnewald, U.; Badur, R.; Flachmann, R.; Stitt, M.: A small decrease of plastid transketolase activity in antisense tobacco transformants has dramatic effects on photosynthesis and phenylpropanoid metabolism. Plant Cell 13 (3), pp. 535 - 551 (2001)
394.
Journal Article
Loef, I.; Stitt, M.; Geigenberger, P.: Increased levels of adenine nucleotides modify the interaction between starch synthesis and respiration when adenine is supplied to discs from growing potato tubers. Planta 212 (5-6), pp. 782 - 791 (2001)
395.
Journal Article
Matt, P.; Geiger, M.; Walch-Liu, P.; Engels, C.; Krapp, A.; Stitt, M.: The immediate cause of the diurnal changes of nitrogen metabolism in leaves of nitrate-replete tobacco: a major imbalance between the rate of nitrate reduction and the rates of nitrate uptake and ammonium metabolism during the first part of the light period. Plant Cell and Environment 24 (2), pp. 177 - 190 (2001)
396.
Journal Article
Matt, P.; Geiger, M.; Walch-Liu, P.; Engels, C.; Krapp, A.; Stitt, M.: Elevated carbon dioxide increases nitrate uptake and nitrate reductase activity when tobacco is growing on nitrate, but increases ammonium uptake and inhibits nitrate reductase activity when tobacco is growing on ammonium nitrate. Plant Cell and Environment 24 (11), pp. 1119 - 1137 (2001)
397.
Journal Article
Mueller, C.; Scheible, W.-R.; Stitt, M.; Krapp, A.: Influence of malate and 2-oxoglutarate on the NIA transcript level and nitrate reductase activity in tobacco leaves. Plant Cell and Environment 24 (2), pp. 191 - 203 (2001)
398.
Journal Article
Thimm, O.; Essigmann, B.; Kloska, S.; Altmann, T.; Buckhout, T. J.: Response of arabidopsis to iron deficiency stress as revealed by microarray analysis. Plant Physiology 127 (3), pp. 1030 - 1043 (2001)
399.
Journal Article
Geigenberger, P.; Fernie, A. R.; Gibon, Y.; Christ, M.; Stitt, M.: Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Journal of Biological Chemistry 381 (8), pp. 723 - 740 (2000)
400.
Journal Article
Geigenberger, P.; Mueller-Roeber, B.; Stitt, M.: Contribution of adenosine 5 '-diphosphoglucose pyrophosphorylase to the control of starch synthesis is decreased by water stress in growing potato tubers. Planta 209 (3), pp. 338 - 345 (1999)
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