Journal Article (387)

51.
Journal Article
Dong, Z.; Xiao, Y.; Govindarajulu, R.; Feil, R.; Siddoway, M. L.; Nielsen, T.; Lunn, J. E.; Hawkins, J.; Whipple, C.; Chuck, G.: The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression. Nature Communications 10 (1), 3810 (2019)
52.
Journal Article
Ferrari, C.; Proost, S.; Janowski, M.; Becker, J.; Nikoloski, Z.; Bhattacharya, D.; Price, D.; Tohge, T.; Bar-Even, A.; Fernie, A. R. et al.; Stitt, M.; Mutwil, M.: Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, 737 (2019)
53.
Journal Article
Flis, A.; Mengin, V.; Ivakov, A.; Mugford, S.T.; Hubberten, H. M.; Encke, B.; Krohn, N.; Höhne, M.; Feil, R.; Hoefgen, R. et al.; Lunn, J. E.; Millar, A.J.; Smith, A.M.; Sulpice, R.; Stitt, M.: Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves. Plant, Cell and Environment 42 (2), pp. 549 - 573 (2019)
54.
Journal Article
Levey, M.; Timm, S.; Mettler-Altmann, T.; Borghi, G.L.; Koczor, M.; Arrivault, S.; Pm Weber, A.; Bauwe, H.; Gowik, U.; Westhoff, P.: Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C4 plant Flaveria bidentis. Journal of Experimental Botany 70 (2), pp. 575 - 587 (2019)
55.
Journal Article
Medeiros, D.B.; Arrivault, S.; Alpers, J.; Fernie, A. R.; Aarabi, F.: Non-aqueous Fractionation (NAF) for Metabolite Analysis in Subcellular Compartments of Arabidopsis Leaf Tissues. Bio-protocol 9 (20), UNSP e3399 (2019)
56.
Journal Article
Meyer, R. C.; Gryczka, C.; Neitsch, C.; Mueller, M.; Braeutigam, A.; Schlereth, A.; Schoen, H.; Weigelt-Fischer, K.; Altmann, T.: Genetic diversity for nitrogen use efficiency in Arabidopsis thaliana. Planta 250 (1), pp. 41 - 57 (2019)
57.
Journal Article
Olas, J. J.; Van Dingenen, J.; Abel, C.; Dzialo, M.; Feil, R.; Krapp, A.; Schlereth, A.; Wahl, V.: Nitrate acts at the Arabidopsis thaliana shoot apical meristem to regulate flowering time. New Phytologist 223 (2), pp. 814 - 827 (2019)
58.
Journal Article
Olas, J. J.; Wahl, V.: Tissue-specific NIA1 and NIA2 expression in Arabidopsis thaliana. Plant Signaling & Behavior 14 (11), 1656035 (2019)
59.
Journal Article
Price, D.C.; Goodenough, U.W.; Roth, R.; Lee, J.-H.; Kariyawasam, T.; Mutwil, M.; Ferrari, C.; Facchinelli, F.; Ball, S.G.; Cenci, U. et al.; Chan, C.X.; Wagner, N.E.; Yoon, H.S.; Weber, A.P.M.; Bhattacharya, D.: Analysis of an improved Cyanophora paradoxa genome assembly. DNA research: an international journal for rapid publication of reports on genes and genomes 26 (4), pp. 287 - 299 (2019)
60.
Journal Article
Rosado-Souza, L.; David, L.C.; Drapal, M.; Fraser, P.D.; Hofmann, J.; Klemens, P.A.W.; Ludewig, F.; Neuhaus, H.E.; Obata, T.; Perez-Fons, L. et al.; Schlereth, A.; Sonnewald, U.; Stitt, M.; Zeeman, S.C.; Zierer, W.; Fernie, A. R.: Cassava Metabolomics and Starch Quality. Current protocols in plant biology 4 (4), e20102 (2019)
61.
Journal Article
Schwacke, R.; Ponce-Soto, G. Y.; Krause, K.; Bolger, A. M.; Arsova, B.; Hallab, A.; Gruden, K.; Stitt, M.; Bolger, M. E.; Usadel, B.: MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis. Molecular Plant 12 (6), pp. 879 - 892 (2019)
62.
Journal Article
Torralbo, F.; Vicente, R.; Morcuende, R.; Gonzalez-Murua, C.; Aranjuelo, I.: C and N metabolism in barley leaves and peduncles modulates responsiveness to changing CO2. Journal of Experimental Botany 70 (2), pp. 599 - 611 (2019)
63.
Journal Article
Vicente, R.; Bolger, A. M.; Martinez-Carrasco, R.; Pérez, P.; Gutiérrez, E.; Usadel, B.; Morcuende, R.: De novo transcriptome analysis of durum wheat flag leaves provides new insights into the regulatory response to elevated CO2 and high temperature. Frontiers in Plant Science 10, 1605 (2019)
64.
Journal Article
Yoshida, T.; Obata, T.; Feil, R.; Lunn, J. E.; Fujita, Y.; Yamaguchi-Shinozaki, K.; Fernie, A. R.: The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Nonstress Conditions. The Plant Cell 31 (1), pp. 84 - 105 (2019)
65.
Journal Article
dos Anjos, L.; Pandey, P. K.; Moraes, T. A.; Feil, R.; Lunn, J. E.; Stitt, M.: Feedback regulation by trehalose 6-phosphate slows down starch mobilization below the rate that would exhaust starch reserves at dawn in Arabidopsis leaves. Plant Direct 2 (8), e00078 (2018)
66.
Journal Article
Janowski, M.; Zoschke, R.; Scharff, L. B.; Martinez-Jaime, S.; Ferrari, C.; Proost, S.; Ng Wei Xiong, J.; Omranian, N.; Musialak-Lange, M.; Nikoloski, Z. et al.; Graf, A.; Schöttler, M. A.; Sampathkumar, A.; Vaid, N.; Mutwil, M.: AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96 (2), pp. 404 - 420 (2018)
67.
Journal Article
Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)
68.
Journal Article
Andersson, M.; Turesson, H.; Arrivault, S.; Zhang, Y.; Fält, A.-S.; Fernie, A. R.; Hofvander, P.: Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato. Journal of Experimental Botany 69 (8), pp. 1913 - 1924 (2018)
69.
Journal Article
Annunziata, M. G.: The Long and the Short of It: GA 2-oxidaseA9 Regulates Plant Height in Wheat. Plant Physiology 177 (1), pp. 3 - 4 (2018)
70.
Journal Article
Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Koehl, K. I.; Lunn, J. E.; Stitt, M.: Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment. Journal of Experimental Botany 69 (20), pp. 4881 - 4895 (2018)
71.
Journal Article
Ciarmiello, L. F.; Di Maro, A.; Woodrow, P.; Annunziata, M. G.; Kafantaris, I.; Mirto, A.; Iannuzzi, F.; Fuggi, A.; Carillo, P.: Unveiling the Enigmatic Structure of TdCMO Transcripts in Durum Wheat. Agronomy 8 (11), 270 (2018)
72.
Journal Article
Fedosejevs, E.T.; Feil, R.; Lunn, J. E.; Plaxton, W.C.: The signal metabolite trehalose-6-phosphate inhibits the sucrolytic activity of sucrose synthase from developing castor beans. FEBS Letters 592 (15), pp. 2525 - 2532 (2018)
73.
Journal Article
Ferrari, C.; Proost, S.; Ruprecht, C.; Mutwil, M.: PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research 46 (W1), pp. W76 - W83 (2018)
74.
Journal Article
Frei, B.; Eisenach, C.; Martinoia, E.; Hussein, S.; Chen, X.-Z.; Arrivault, S.; Neuhaus, H.E.: Purification and functional characterization of the vacuolar malate transporter tDT from Arabidopsis. The Journal of Biological Chemistry 293 (11), pp. 4180 - 4190 (2018)
75.
Journal Article
Hansen, B. O.; Meyer, E. H.; Ferrari, C.; Vaid, N.; Movahedi, S.; Vandepoele, K.; Nikoloski, Z.; Mutwil, M.: Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217 (4), pp. 1521 - 1534 (2018)
76.
Journal Article
Kruesemann, J. L.; Lindner, S. N.; Dempfle, M.; Widmer, J.; Arrivault, S.; Debacker, M.; He, H.; Kubis, A.; Chayot, R.; Anissimova, M. et al.; Marliere, P.; Cotton, C. A. R.; Bar-Even, A.: Artificial pathway emergence in central metabolism from three recursive phosphoketolase reactions. The FEBS Journal 285 (23), pp. 4367 - 4377 (2018)
77.
Journal Article
Küken, A.; Sommer, F.; Yaneva-Roder, L.; Mackinder, L. C. M.; Höhne, M.; Geimer, S.; Jonikas, M. C.; Schroda, M.; Stitt, M.; Nikoloski, Z. et al.; Mettler, T.: Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, e37960 (2018)
78.
Journal Article
Roach, M.; Arrivault, S.; Mahboubi, A.; Krohn, N.; Sulpice, R.; Stitt, M.; Niittyla, T.: Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood (vol 68, pg 3529, 2017). Journal of Experimental Botany 69 (16), pp. 4143 - 4144 (2018)
79.
Journal Article
Seaton, D. D.; Graf, A.; Baerenfaller, K.; Stitt, M.; Millar, A. J.; Gruissem, W.: Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism. Molecular Systems Biology 14 (3), e7962 (2018)
80.
Journal Article
Verbančič, J.; Lunn, J. E.; Stitt, M.; Persson, S.: Carbon Supply and the Regulation of Cell Wall Synthesis. Molecular Plant 11 (1), pp. 75 - 94 (2018)
81.
Journal Article
Zhai, Z.; Keereetaweep, J.; Liu, H.; Feil, R.; Lunn, J. E.; Shanklin, J.: Trehalose 6-Phosphate Positively Regulates Fatty Acid Synthesis by Stabilizing WRINKLED1. The Plant Cell 30 (10), pp. 2616 - 2627 (2018)
82.
Journal Article
Zhang, Y.; Zhang, Y.; McFarlane, H. E.; Obata, T.; Richter, A. S.; Lohse, M.; Grimm, B.; Persson, S.; Fernie, A. R.; Giavalisco, P.: Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation. Plant Physiology 178 (1), pp. 101 - 117 (2018)
83.
Journal Article
Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Mengin, V.; Lauxmann, M.; Koehl, K. I.; Nikoloski, Z.; Stitt, M. et al.; Lunn, J. E.; Raines, C.: Getting back to nature: a reality check for experiments in controlled environments. Journal of Experimental Botany 68 (16), pp. 4463 - 4477 (2017)
84.
Journal Article
Annunziata, M. G.; Ciarmiello, L.; Woodrow, P.; Maximova, E.; Fuggi, A.; Carillo, P.: Durum wheat roots adapt to salinity remodelling the cellular content of nitrogen metabolites and sucrose. Frontiers in Plant Science 7, 2035 (2017)
85.
Journal Article
Apelt, F.; Breuer, D.; Olas, J. J.; Annunziata, M. G.; Flis, A.; Nikoloski, Z.; Kragler, F.; Stitt, M.: Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement. Plant Physiology 174 (3), pp. 1949 - 1968 (2017)
86.
Journal Article
Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)
87.
Journal Article
Bledsoe, S. W.; Henry, C.; Griffiths, C. A.; Paul, M. J.; Feil, R.; Lunn, J. E.; Stitt, M.; Lagrimini, L. M.: The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion. BMC Plant Biology 17, 74 (2017)
88.
Journal Article
Fernandez, O.; Ishihara, H.; George, G. M.; Mengin, V.; Flis, A.; Sumner, D.; Arrivault, S.; Feil, R.; Lunn, J. E.; Zeeman, S. C. et al.; Smith, A. M.; Stitt, M.: Leaf Starch Turnover Occurs in Long Days and in Falling Light at the End of the Day. Plant Physiology 174 (4), pp. 2199 - 2212 (2017)
89.
Journal Article
Ficarra, F. A.; Grandellis, C.; Galván, E. M.; Ielpi, L.; Feil, R.; Lunn, J. E.; Gottig, N.; Ottado, J.: Xanthomonas citri ssp. citri requires the outer membrane porin OprB for maximal virulence and biofilm formation. Molecular Plant Pathology 18 (5), pp. 720 - 733 (2017)
90.
Journal Article
Fichtner, F.; Barbier, F. F.; Feil, R.; Watanabe, M.; Annunziata, M. G.; Chabikwa, T. G.; Hoefgen, R.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.). The Plant Journal 92 (4), pp. 611 - 623 (2017)
91.
Journal Article
Filippi, C.V.; Zubrzycki, J.E.; Di Rienzo, J.A.; Quiroz, F.; Fusari, C. M.; Alvarez, D.; Maringolo, C.A.; Cordes, D.; Escande, A.; Hopp, H.E. et al.; Heinz, R.A.; Lia, V.V.; Paniego, N.B.: Phenotyping sunflower genetic resources for sclerotinia head rot response: Assessing variability for disease resistance breeding. Plant Disease 101 (11), pp. 1941 - 1948 (2017)
92.
Journal Article
Fluegel, F.; Timm, S.; Arrivault, S.; Florian, A.; Stitt, M.; Fernie, A. R.; Bauwe, H.: The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis. The Plant Cell 29 (10), pp. 2537 - 2551 (2017)
93.
Journal Article
Fusari, C. M.; Kooke, R.; Lauxmann, M.; Annunziata, M. G.; Enke, B.; Höhne, M.; Krohn, N.; Becker, F. F. M.; Schlereth, A.; Sulpice, R. et al.; Stitt, M.; Keurentjes, J. J. B.: Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis. The Plant Cell 29 (10), pp. 2349 - 2373 (2017)
94.
Journal Article
Glaubitz, U.; Li, X.; Schaedel, S.; Erban, A.; Sulpice, R.; Kopka, J.; Hincha, D. K.; Zuther, E.: Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles. Plant, Cell and Environment 40 (1), pp. 121 - 137 (2017)
95.
Journal Article
Graf, A.; Coman, D.; Uhrig, R.G.; Walsh, S.; Flis, A.; Stitt, M.; Gruissem, W.: Parallel analysis of arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology 7 (3), 160333 (2017)
96.
Journal Article
Hill, B. L.; Figueroa, C. M.; Asencion Diez, M. D.; Lunn, J. E.; Iglesias, A. A.; Ballicora, M. A.: On the stability of nucleoside diphosphate glucose metabolites: implications for studies of plant carbohydrate metabolism. Journal of Experimental Botany 68 (13), pp. 3331 - 3337 (2017)
97.
Journal Article
Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), pp. 416 - 429 (2017)
98.
Journal Article
Ivakov, A.; Flis, A.; Apelt, F.; Fünfgeld, M. F.F.; Scherer, U.; Stitt, M.; Kragler, F.; Vissenberg, K.; Persson, S.; Suslov, D.: Cellulose Synthesis and Cell Expansion Are Regulated by Different Mechanisms in Growing Arabidopsis Hypocotyls. The Plant Cell 29 (6), pp. 1305 - 1315 (2017)
99.
Journal Article
Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology 174 (1), pp. 73 - 85 (2017)
100.
Journal Article
Marshall-Colon, A.; Long, S. P.; Allen, D. K.; Allen, G.; Beard, D. A.; Benes, B.; von Caemmerer, S.; Christensen, A. J.; Cox, D. J.; Hart, J. C. et al.; Hirst, P. M.; Kannan, K.; Katz, D. S.; Lynch, J. P.; Millar, A. J.; Panneerselvam, B.; Price, N. D.; Prusinkiewicz, P.; Raila, D.; Shekar, R. G.; Shrivastava, S.; Shukla, D.; Srinivasan, V.; Stitt, M.; Turk, M. J.; Voit, E. O.; Wang, Y.; Yin, X.; Zhu, X.-G.: Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science 8, 786 (2017)
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