Publications of A. R. Fernie

Phuc, T. D., Prudent, M., Sulpice, R., Causse, M. & Fernie, A. R. The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population. Plant Physiology 154, 1128–1142 (2010).

Radchuk, R., Conrad, U., Saalbach, I., Giersberg, M., Emery, R. J. N., Kuester, H., Nunes-Nesi, A., Fernie, A. R., Weschke, W. & Weber, H. Abscisic acid deficiency of developing pea embryos achieved by immunomodulation attenuates developmental phase transition and storage metabolism. The Plant Journal 64, 715–730 (2010).

Riebeseel, E., Haeusler, R. E., Radchuk, R., Meitzel, T., Hajirezaei, M.-R., Emery, R. J. N., Kuester, H., Nunes-Nesi, A., Fernie, A. R., Weschke, W. & Weber, H. The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos. The Plant Journal 61, 350–363 (2010).

Rocha, M., Licausi, F., Araujo, W. L., Nunes-Nesi, A., Sodek, L., Fernie, A. R. & van Dongen, J. T. Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus. Plant Physiology 152, 1501–1513 (2010).

Sienkiewicz-Porzucek, A., Sulpice, R., Osorio, S., Krahnert, I., Leisse, A., Urbanczyk-Wochniak, E., Hodges, M., Fernie, A. R. & Nunes-Nesi, A. Mild Reductions in Mitochondrial NAD-Dependent Isocitrate Dehydrogenase Activity Result in Altered Nitrate Assimilation and Pigmentation But Do Not Impact Growth. Molecular Plant 3, 156–173 (2010).

Skirycz, A., de Bodt, S., Obata, T., de Clercq, I., Claeys, H., de Rycke, R., Andriankaja, M., van Aken, O., van Breusegem, F., Fernie, A. R. & Inze, D. Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress. Plant Physiology 152, 226–244 (2010).

Steinhauser, M.-C., Steinhauser, D., Koehl, K. I., Carrari, F., Gibon, Y., Fernie, A. R. & Stitt, M. Enzyme Activity Profiles during Fruit Development in Tomato Cultivars and Solanum pennellii. Plant Physiology 153, 80–98 (2010).

Stracke, R., Jahns, O., Keck, M., Tohge, T., Niehaus, K., Fernie, A. R. & Weisshaar, B. Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12-and MYB111-independent flavonol glycoside accumulation. New Phytologist 188, 985–1000 (2010).

Sulpice, R., Sienkiewicz-Porzucek, A., Osorio, S., Krahnert, I., Stitt, M., Fernie, A. R. & Nunes-Nesi, A. Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids 39, 1055–1066 (2010).

Sulpice, R., Trenkamp, S., Steinfath, M., Usadel, B., Gibon, Y., Witucka-Wall, H., Pyl, E. T., Tschoep, H., Steinhauser, M.-C., Guenther, M., Hoehne, M., Rohwer, J. M., Altmann, T., Fernie, A. R. & Stitt, M. Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 22, 2872–2893 (2010).

Taylor, L., Nunes-Nesi, A., Parsley, K., Leiss, A., Leach, G., Coates, S., Wingler, A., Fernie, A. R. & Hibberd, J. M. Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. The Plant Journal 62, 641–652 (2010).

Tohge, T. & Fernie, A. R. Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nature Protocols 5, 1210–1227 (2010).

van der Merwe, M. J., Osorio, S., Araujo, W. L., Balbo, I., Nunes-Nesi, A., Maximova, E., Carrari, F., Bunik, V. I., Persson, S. & Fernie, A. R. Tricarboxylic Acid Cycle Activity Regulates Tomato Root Growth via Effects on Secondary Cell Wall Production. Plant Physiology 153, 611–621 (2010).

Vogel, J. T., Walter, M. H., Giavalisco, P., Lytovchenko, A., Kohlen, W., Charnikhova, T., Simkin, A. J., Goulet, C., Strack, D., Bouwmeester, H. J., Fernie, A. R. & Klee, H. J. SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. The Plant Journal 61, 300–311 (2010).

Angelovici, R., Fait, A., Zhu, X. H., Szymanski, J., Feldmesser, E., Fernie, A. R. & Galili, G. Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development. Plant Physiology 151, 2058–2072 (2009).

Brautigam, K., Dietzel, L., Kleine, T., Stroher, E., Wormuth, D., Dietz, K. J., Radke, D., Wirtz, M., Hell, R., Doermann, P., Nunes-Nesi, A., Schauer, N., Fernie, A. R., Oliver, S. N., Geigenberger, P., Leister, D. & Pfannschmidt, T. Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis. The Plant Cell 21, 2715–2732 (2009).

Fernie, A. R. & Martinoia, E. Malate. Jack of all trades or master of a few? Phytochemistry 70, 828–832 (2009).

Gilbert, L., Alhagdow, M., Nunes-Nesi, A., Quemener, B., Guillon, F., Bouchet, B., Faurobert, M., Gouble, B., Page, D., Garcia, V., Petit, J., Stevens, R., Causse, M., Fernie, A. R., Lahaye, M., Rothan, C. & Baldet, P. GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60, 499–508 (2009).

Janacek, S. H., Trenkamp, S., Palmer, B., Brown, N. J., Parsley, K., Stanley, S., Astley, H. M., Rolfe, S. A., Quick, W. P., Fernie, A. R. & Hibberd, J. M. Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59, 329–343 (2009).

Lehmann, M., Schwarzlander, M., Obata, T., Sirikantaramas, S., Burow, M., Olsen, C. E., Tohge, T., Fricker, M. D., Moller, B. L., Fernie, A. R., Sweetlove, L. J. & Laxa, M. The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2, 390–406 (2009).