Publications of J. Selbig

Wienkoop, S., Morgenthal, K., Wolschin, F., Scholz, M., Selbig, J. & Weckwerth, W. Integration of metabolomic and proteomic phenotypes. Molecular & Cellular Proteomics 7, 1725–1736 (2008).

Baxter, C. J., Redestig, H., Schauer, N., Repsilber, D., Patil, K. R., Nielsen, J., Selbig, J., Liu, J. L., Fernie, A. R. & Sweetlove, L. J. The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143, 312–325 (2007).

Grimbs, S., Selbig, J., Bulik, S., Holzhuetter, H. G. & Steuer, R. The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Molecular Systems Biology 3, 146 (2007).

Hummel, J., Niemann, M., Wienkoop, S., Schulze, W., Steinhauser, D., Selbig, J., Walther, D. & Weckwerth, W. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, 216 (2007).

Meyer, R. C., Steinfath, M., Lisec, J., Becher, M., Witucka-Wall, H., Torjek, O., Fiehn, O., Eckardt, A., Willmitzer, L., Selbig, J. & Altmann, T. The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 104, 4759–4764 (2007).

Redestig, H., Repsilber, D., Sohler, F. & Selbig, J. Integrating functional knowledge during sample clustering for microarray data using unsupervised decision trees. Biometrical Journal 49, 214–229 (2007).

Redestig, H., Weicht, D., Selbig, J. & Hannah, M. A. Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 8, 454 (2007).

Stacklies, W., Redestig, H., Scholz, M., Walther, D. & Selbig, J. pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23, 1164–1167 (2007).

Steuer, R., Nesi, A. N., Fernie, A. R., Gross, T., Blasius, B. & Selbig, J. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23, 1378–1385 (2007).

Walther, D., Brunnemann, R. & Selbig, J. The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana. PLoS Genetics 3, e11 (2007).

Moehlig, M., Floter, A., Spranger, J., Weickert, M. O., Schill, T., Schlosser, H. W., Brabant, G., Pfeiffer, A. F. H., Selbig, J. & Schofl, C. Predicting impaired glucose metabolism in women with polycystic ovary syndrome by decision tree modelling. Diabetologia 49, 2572–2579 (2006).

Steinfath, M., Repsilber, D., Hische, M., Schauer, N., Fernie, A. R. & Selbig, J. Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, 2–18 (2006).

Steuer, R., Gross, T., Selbig, J. & Blasius, B. Structural kinetic modeling of metabolic networks. Proceedings of the National Academy of Sciences of the United States of America 103, 11868–11873 (2006).

Steuer, R., Humburg, P. & Selbig, J. Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics 7, 380 (2006).

Balduin, M., Sierra, S., Daumer, M. P., Rockstroh, J. K., Oette, M., Fatkenheuer, G., Kupfer, B., Beerenwinkel, N., Hoffmann, D., Selbig, J., Pfister, H. J. & Kaiser, R. Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy. Journal of Clinical Virology 34, 277–287 (2005).

Beerenwinkel, N., Daumer, M., Sing, T., Rahnenfuhrer, J., Lengauer, T., Selbig, J., Hoffmann, D. & Kaiser, R. Estimating HIV evolutionary pathways and the genetic barrier to drug resistance. Journal of Infectious Diseases 191, 1953–1960 (2005).

Beerenwinkel, N., Rahnenfuhrer, J., Kaiser, R., Hoffmann, D., Selbig, J. & Lengauer, T. Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics 21, 2106–2107 (2005).

Hummel, J., Keshvari, N., Weckwerth, W. & Selbig, J. Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinformatics 6, 164 (2005).

Morgenthal, K., Wienkoop, S., Scholz, M., Selbig, J. & Weckwerth, W. Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1, 109–121 (2005).

Scholz, M., Kaplan, F., Guy, C. L., Kopka, J. & Selbig, J. Non-linear PCA: a missing data approach. Bioinformatics 21, 3887–3895 (2005).