Publications of A. R. Fernie

Weigelt, K., Kuester, H., Radchuk, R., Mueller, M., Weichert, H., Fait, A., Fernie, A. R., Saalbach, I. & Weber, H. Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism. The Plant Journal 55, 909–926 (2008).

Alhagdow, M., Mounet, F., Gilbert, L., Nunes-Nesi, A., Garcia, V., Just, D., Petit, J., Beauvoit, B., Fernie, A. R., Rothan, C. & Baldet, P. Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato(1[w][OA]). Plant Physiology 145, 1408–1422 (2007).

Baxter, C. J., Liu, J. L., Fernie, A. R. & Sweetlove, L. J. Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68, 2313–2319 (2007).

Baxter, C. J., Redestig, H., Schauer, N., Repsilber, D., Patil, K. R., Nielsen, J., Selbig, J., Liu, J. L., Fernie, A. R. & Sweetlove, L. J. The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143, 312–325 (2007).

Ding, L., Hofius, D., Hajirezaei, M.-R., Fernie, A. R., Bornke, F. & Sonnewald, U. Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants. Journal of Experimental Botany 58, 2053–2067 (2007).

Fahnenstich, H., Saigo, M., Niessen, M., Zanor, M. I., Andreo, C. S., Fernie, A. R., Drincovich, M. F., Flugge, U. I. & Maurino, V. G. Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C(4)NADP-malic enzyme causes accelerated senescence during extended darkness. Plant Physiology 145, 640–652 (2007).

Footitt, S., Dietrich, D., Fait, A., Fernie, A. R., Holdsworth, M. J., Baker, A. & Theodoulou, F. L. The COMATOSE ATP-binding cassette transporter is required for full fertility in arabidopsis. Plant Physiology 144, 1467–1480 (2007).

Frankel, N., Nunes-Nesi, A., Balbo, I., Mazuch, J., Centeno, D., Iusem, N. D., Fernie, A. R. & Carrari, F. ci21A/Asr1 expression influences glucose accumulation in potato tubers. Plant Molecular Biology 63, 719–730 (2007).

Graham, J. W., Williams, T. C., Morgan, M., Fernie, A. R., Ratcliffe, R. G. & Sweetlove, L. J. Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19, 3723–3738 (2007).

Lemaitre, T., Urbanczyk-Wochniak, E., Flesch, V., Bismuth, E., Fernie, A. R. & Hodges, M. NAD-dependent isocitrate dehydrogenase mutants of arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiology 144, 1546–1558 (2007).

Messerli, G., Nia, V. P., Trevisan, M., Kolbe, A., Schauer, N., Geigenberger, P., Chen, J. C., Davison, A. C., Fernie, A. R. & Zeeman, S. C. Rapid classification of phenotypic mutants of arabidopsis via metabolite fingerprinting. Plant Physiology 143, 1484–1492 (2007).

Nunes-Nesi, A., Carrari, F., Gibon, Y., Sulpice, R., Lytovchenko, A., Fisahn, J., Graham, J., Ratcliffe, R. G., Sweetlove, L. J. & Fernie, A. R. Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50, 1093–1106 (2007).

Raschke, M., Buerkle, L., Mueller, N., Nunes-Nesi, A., Fernie, A. R., Arigoni, D., Amrhein, N. & Fitzpatrick, T. B. Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proceedings of the National Academy of Sciences of the United States of America 104, 19637–19642 (2007).

Saladie, M., Matas, A. J., Isaacson, T., Jenks, M. A., Goodwin, S. M., Niklas, K. J., Xiaolin, R., Labavitch, J. M., Shackel, K. A., Fernie, A. R., Lytovchenko, A., O'Neill, M. A., Watkins, C. B. & Rose, J. K. C. A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiology 144, 1012–1028 (2007).

Semel, Y., Schauer, N., Roessner, U., Zamir, D. & Fernie, A. R. Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3, 289–295 (2007).

Steuer, R., Nesi, A. N., Fernie, A. R., Gross, T., Blasius, B. & Selbig, J. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23, 1378–1385 (2007).

Studart-Guimaraes, C., Fait, A., Nunes-Nesi, A., Carrari, F., Usadel, B. & Fernie, A. R. Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145, 626–639 (2007).

Szymanski, J., Bielecka, M., Carrari, F., Fernie, A. R., Hoefgen, R. & Nikiforova, V. J. On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68, 2163–2175 (2007).

Fait, A., Angelovici, R., Less, H., Ohad, I., Urbanczyk-Wochniak, E., Fernie, A. R. & Galili, G. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142, 839–854 (2006).

Farre, E. M., Tech, S., Trethewey, R. N., Fernie, A. R. & Willmitzer, L. Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62, 165–179 (2006).