Publications of H. Redestig

Cuadros-Inostroza, A., Caldana, C., Redestig, H., Kusano, M., Lisec, J., Pena-Cortes, H., Willmitzer, L. & Hannah, M. A. TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, 428 (2009).

Lisec, J., Meyer, R. C., Steinfath, M., Redestig, H., Becher, M., Witucka-Wall, H., Fiehn, O., Torjek, O., Selbig, J., Altmann, T. & Willmitzer, L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53, 960–972 (2008).

Sanchez, D. H., Lippold, F., Redestig, H., Hannah, M. A., Erban, A., Kraemer, U., Kopka, J. & Udvardi, M. K. Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant Journal 53, 973–987 (2008).

Sanchez, D. H., Redestig, H., Kraemer, U., Udvardi, M. K. & Kopka, J. Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping? Plant Signaling & Behavior 3, 598–600 (2008).

Baxter, C. J., Redestig, H., Schauer, N., Repsilber, D., Patil, K. R., Nielsen, J., Selbig, J., Liu, J. L., Fernie, A. R. & Sweetlove, L. J. The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143, 312–325 (2007).

Redestig, H., Repsilber, D., Sohler, F. & Selbig, J. Integrating functional knowledge during sample clustering for microarray data using unsupervised decision trees. Biometrical Journal 49, 214–229 (2007).

Redestig, H., Weicht, D., Selbig, J. & Hannah, M. A. Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 8, 454 (2007).

Stacklies, W., Redestig, H., Scholz, M., Walther, D. & Selbig, J. pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23, 1164–1167 (2007).

Redestig, H., Szymanski, J., Hirai, M. Y., Selbig, J., Willmitzer, L., Saito, K. & Nikoloski, Z. in Biology of Plant Metabolomics (ed. Hall, R. D.) (Wiley-Blackwell, 2011). doi:10.1002/9781444339956.ch9

Redestig, H., Sohler, F., Zimmer, R. & Selbig, J. in Advances in Data Analysis (eds. Decker, R. & Lenz, H.-J.) 585–592 (Springer-Verlag, 2007). at <http://hdl.handle.net/11858/00-001M-0000-0014-2896-C>

Willmitzer, L., Caldana, C., Fernie, A. R., Giavalisco, P., MA, H., Redestig, H. & Steinhauser, D. Integrative Analysis of Transcriptome and Metabolome Data. in Proceedings of the German Conference on Bioinformatics 01, (2007).

Hannah, M. A., Redestig, H., Leisse, A. & Willmitzer, L. Global mRNA changes in microarray experiments. Nature Biotechnology 26, 741–742 (2008).

Usadel, B., Nagel, A., Steinhauser, D., Gibon, Y., Blaesing, O. E., Redestig, H., Sreenivasulu, N., Krall, L., Hannah, M. A., Poree, F., Fernie, A. R. & Stitt, M. PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, 535 (2006).

Usadel, B., Nagel, A., Thimm, O., Redestig, H., Bläsing, O. E., Palacios-Rojas, N., Selbig, J., Hannemann, J., Piques, M. C., Steinhauser, D., Scheible, W.-R., Gibon, Y., Morcuende, R., Weicht, D., Meyer, S. & Stitt, M. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138, 1195–1204 (2005).