Publications of A. Küken

Küken, A., Treves, H. & Nikoloski, Z. A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 14, (2023).

Águila Ruiz-Sola, M., Flori, S., Yuan, Y., Villain, G., Sanz-Luque, E., Redekop, P., Tokutsu, R., Küken, A., Tsichla, A., Kepesidis, G., Allorent, G., Arend, M., Iacono, F., Finazzi, G., Hippler, M., Nikoloski, Z., Minagawa, J., Grossman, A. R. & Petroutsos, D. Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 14, (2023).

Treves, H., Küken, A., Arrivault, S., Ishihara, H., Hoppe, I., Erban, A., Höhne, M., Moraes, T. A., Kopka, J., Szymanski, J., Nikoloski, Z. & Stitt, M. Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, 78–91 (2021).

Küken, A., Gennermann, K. & Nikoloski, Z. Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal 103, 2168–2177 (2020).

Tong, H., Küken, A. & Nikoloski, Z. Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 11, (2020).

Küken, A., Eloundou-Mbebi, J. M. O., Basler, G. & Nikoloski, Z. Cellular determinants of metabolite concentration ranges. PLoS Computational Biology 15, (2019).

Küken, A. & Nikoloski, Z. Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 179, 894–906 (2019).

Küken, A., Sommer, F., Yaneva-Roder, L., Mackinder, L. C. M., Höhne, M., Geimer, S., Jonikas, M. C., Schroda, M., Stitt, M., Nikoloski, Z. & Mettler, T. Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, (2018).

Basler, G., Küken, A., Fernie, A. R. & Nikoloski, Z. Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, (2016).

Eloundou-Mbebi, J. M. O., Küken, A., Omranian, N., Kleessen, S., Neigenfind, J., Basler, G. & Nikoloski, Z. A network property necessary for concentration robustness. Nature Communications 7, (2016).

Schwahn, K., Küken, A., Kliebenstein, D. J., Fernie, A. R. & Nikoloski, Z. Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172, 1324–1333 (2016).

Küken, A. & Nikoloski, Z. in Methods in Molecular Biology 1653, 195–202 (Elsevier, 2017).

Tong, H., Küken, A., Razaghi-Moghadam, Z. & Nikoloski, Z. Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 78, 5123–5138 (2021).