Zeitschriftenartikel (199)

101.
Zeitschriftenartikel
Kirma, M.; Araujo, W. L.; Fernie, A. R.; Galili, G.: The multifaceted role of aspartate-family amino acids in plant metabolism. Journal of Experimental Botany 63 (14), S. 4995 - 5001 (2012)
102.
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Kleessen, S.; Antonio, C.; Sulpice, R.; Laitinen, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 3, S. 1319 (2012)
103.
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Kleessen, S.; Araujo, W. L.; Fernie, A. R.; Nikoloski, Z.: Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 287 (14), S. 11122 - 11131 (2012)
104.
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Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 3, S. 217 (2012)
105.
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Kleessen, S.; Nikoloski, Z.: Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 6 (1), S. 16 (2012)
106.
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Klie, S.; Caldana, C.; Nikoloski, Z.: Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 3, S. 249 (2012)
107.
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Klie, S.; Mutwil, M.; Persson, S.; Nikoloski, Z.: Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 8 (9), S. 2233 - 2241 (2012)
108.
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Klie, S.; Nikoloski, Z.: The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 3, S. 115 (2012)
109.
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Kochevenko, A.; Araujo, W. L.; Maloney, G. S.; Tieman, D. M.; Do, P. T.; Taylor, M. G.; Klee, H. J.; Fernie, A. R.: Catabolism of Branched Chain Amino Acids Supports Respiration but Not Volatile Synthesis in Tomato Fruits. Molecular Plant 5 (2), S. 366 - 375 (2012)
110.
Zeitschriftenartikel
Kochevenko, A.; Klee, H. J.; Fernie, A. R.; Araújo, W. L.: Molecular identification of a further branched-chain aminotransferase 7 (BCAT7) in tomato plants. Journal of Plant Physiology 169 (5), S. 437 - 443 (2012)
111.
Zeitschriftenartikel
Köhler, C.; Wolff, P.; Spillane, C.: Epigenetic Mechanisms Underlying Genomic Imprinting in Plants. Annual Review of Plant Biology 63, S. 331 - 352 (2012)
112.
Zeitschriftenartikel
Krech, K.; Ruf, S.; Masduki, F. F.; Thiele, W.; Bednarczyk, D.; Albus, C. A.; Tiller, N.; Hasse, C.; Schöttler, M. A.; Bock, R.: The plastid genome-encoded Ycf4 protein functions as a non-essential assembly factor for photosystem I in higher plants. Plant Physiology 159 (2), S. 579 - 591 (2012)
113.
Zeitschriftenartikel
Kruegel, U.; He, H. X.; Gier, K.; Reins, J.; Chincinska, I.; Grimm, B.; Schulze, W. X.; Kuehn, C.: The Potato Sucrose Transporter StSUT1 Interacts with a DRM-Associated Protein Disulfide Isomerase. Molecular Plant 5 (1), S. 43 - 62 (2012)
114.
Zeitschriftenartikel
Kueger, S.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.: High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions. The Plant Journal 70 (1), S. 39 - 50 (2012)
115.
Zeitschriftenartikel
Lai, A. G.; Doherty, C. J.; Mueller-Roeber, B.; Kay, S. A.; Schippers, J. H. M.; Dijkwel, P. P.: CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses. Proceedings of the National Academy of Sciences of the United States of America 109 (42), S. 17129 - 17134 (2012)
116.
Zeitschriftenartikel
Lambers, H.; Cawthray, G. R.; Giavalisco, P.; Kuo, J.; Laliberte, E.; Pearse, S. J.; Scheible, W.-R.; Stitt, M.; Teste, F.; Turner, B. L.: Proteaceae from severely phosphorus-impoverished soils extensively replace phospholipids with galactolipids and sulfolipids during leaf development to achieve a high photosynthetic phosphorus-use-efficiency. New Phytologist 196 (4), S. 1098 - 1108 (2012)
117.
Zeitschriftenartikel
Larhlimi, A.; David, L.; Selbig, J.; Bockmayr, A.: F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks. Bmc Bioinformatics 13, S. 57 (2012)
118.
Zeitschriftenartikel
Lee, Y. P.; Babakov, A.; de Boer, B.; Zuther, E.; Hincha, D. K.: Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions. BMC Plant Biology 12, S. 131 (2012)
119.
Zeitschriftenartikel
Lehmann, M.; Laxa, M.; Sweetlove, L. J.; Fernie, A. R.; Obata, T.: Metabolic recovery of Arabidopsis thaliana roots following cessation of oxidative stress. Metabolomics 8 (1), S. 143 - 153 (2012)
120.
Zeitschriftenartikel
Li, J. W.; Robison, K.; Martin, M.; Sjodin, A.; Usadel, B.; Young, M.; Olivares, E. C.; Bolser, D. M.: The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Research 40 (Database issue), S. D1313 - D1317 (2012)
121.
Zeitschriftenartikel
Lisso, J.; Schroder, F.; Schippers, J. H.; Mussig, C.: NFXL2 modifies cuticle properties in Arabidopsis. Plant Signaling & Behavior 7 (5), S. 551 - 555 (2012)
122.
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Lohse, M.; Bolger, A. M.; Nagel, A.; Fernie, A. R.; Lunn, J. E.; Stitt, M.; Usadel, B.: RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research 40 (W1), S. W622 - W627 (2012)
123.
Zeitschriftenartikel
Marshall, A.; Aalen, R. B.; Audenaert, D.; Beeckman, T.; Broadley, M. R.; Butenko, M. A.; Cano-Delgado, A. I.; de Vries, S.; Dresselhaus, T.; Felix, G. et al.; Graham, N. S.; Foulkes, J.; Granier, C.; Greb, T.; Grossniklaus, U.; Hammond, J. P.; Heidstra, R.; Hodgman, C.; Hothorn, M.; Inze, D.; Ostergaard, L.; Russinova, E.; Simon, R.; Skirycz, A.; Stahl, Y.; Zipfel, C.; De Smete, I.: Tackling Drought Stress: RECEPTOR-LIKE KINASES Present New Approaches. Plant Cell 24 (6), S. 2262 - 2278 (2012)
124.
Zeitschriftenartikel
Mastrobuoni, G.; Irgang, S.; Pietzke, M.; Assmus, H. E.; Wenzel, M.; Schulze, W. X.; Kempa, S.: Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii. BMC Genomics 13, S. 215 (2012)
125.
Zeitschriftenartikel
Mehterov, N.; Balazadeh, S.; Hille, J.; Toneva, V.; Mueller-Roeber, B.; Gechev, T.: Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes. Plant Physiology and Biochemistry 59, S. 20 - 29 (2012)
126.
Zeitschriftenartikel
Meissner, M.; Orsini, E.; Ruschhaupt, M.; Melchinger, A. E.; Hincha, D. K.; Heyer, A. G.: Mapping quantitative trait loci for freezing tolerance in a recombinant inbred line population of Arabidopsis thaliana accessions Tenela and C24 reveals REVEILLE1 as negative regulator of cold acclimation. Plant Cell and Environment 36, S. 1256 - 1267 (2012)
127.
Zeitschriftenartikel
Meyer, R. C.; Witucka-Wall, H.; Becher, M.; Blacha, A.; Boudichevskaia, A.; Doermann, P.; Fiehn, O.; Friedel, S.; von Korff, M.; Lisec, J. et al.; Melzer, M.; Repsilber, D.; Schmidt, R.; Scholz, M.; Selbig, J.; Willmitzer, L.; Altmann, T.: Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. The Plant Journal 71 (4), S. 669 - 683 (2012)
128.
Zeitschriftenartikel
Morales, S. G.; Trejo-Tellez, L. I.; Gomez Merino, F. C.; Caldana, C.; Espinosa-Victoria, D.; Herrera Cabrera, B. E.: Growth, photosynthetic activity, and potassium and sodium concentration in rice plants under salt stress. ACTA SCIENTIARUM-AGRONOMY 34 (3), S. 317 - 324 (2012)
129.
Zeitschriftenartikel
Mounet, F.; Moing, A.; Kowalczyk, M.; Rohrmann, J.; Petit, J.; Garcia, V.; Maucourt, M.; Yano, K.; Deborde, C.; Aoki, K. et al.; Berges, H.; Granell, A.; Fernie, A. R.; Bellini, C.; Rothan, C.; Lemaire-Chamley, M.: Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. Journal of Experimental Botany 63 (13), S. 4901 - 4917 (2012)
130.
Zeitschriftenartikel
Neumetzler, L.; Humphrey, T.; Lumba, S.; Snyder, S.; Yeats, T. H.; Usadel, B.; Vasilevski, A.; Patel, J.; Rose, J. K. C.; Persson, S. et al.; Bonetta, D.: The FRIABLE1 Gene Product Affects Cell Adhesion in Arabidopsis. PLoS One 7 (8), S. e42914 (2012)
131.
Zeitschriftenartikel
Nguyen, H. C.; Hoefgen, R.; Hesse, H.: Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase. Journal of Experimental Botany 63 (16), S. 5991 - 6001 (2012)
132.
Zeitschriftenartikel
Niessen, M.; Krause, K.; Horst, I.; Staebler, N.; Klaus, S.; Gaertner, S.; Kebeish, R.; Araujo, W. L.; Fernie, A. R.; Peterhansel, C.: Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice. Journal of Experimental Botany 63 (7), S. 2705 - 2716 (2012)
133.
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Noor, E.; Bar-Even, A.; Flamholz, A.; Lubling, Y.; Davidi, D.; Milo, R.: An integrated open framework for thermodynamics of reactions that combines accuracy and coverage. Bioinformatics 28 (15), S. 2037 - 2044 (2012)
134.
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Nordhues, A.; Schöttler, M. A.; Unger, A. K.; Geimer, S.; Schoenfelder, S.; Schmollinger, S.; Ruetgers, M.; Finazzi, G.; Soppa, B.; Sommer, F. et al.; Muehlhaus, T.; Roach, T.; Krieger-Liszkay, A.; Lokstein , H.; Crespo, J. L.; Schroda, M.: Evidence for a Role of VIPP1 in the Structural Organization of the Photosynthetic Apparatus in Chlamydomonas. The Plant Cell 24 (2), S. 637 - 659 (2012)
135.
Zeitschriftenartikel
Obata, T.; Fernie, A. R.: The use of metabolomics to dissect plant responses to abiotic stresses. Cellular and Molecular Life Sciences 69 (19), S. 3225 - 3243 (2012)
136.
Zeitschriftenartikel
Omidbakhshfard, M. A.; Omranian, N.; Ahmadi, F. S.; Nikoloski, Z.; Mueller-Roeber, B.: Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana. Plant Signaling & Behavior 7 (9), S. 1095 - 1102 (2012)
137.
Zeitschriftenartikel
Omranian, N.; Mueller-Roeber, B.; Nikoloski, Z.: PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Molecular BioSystems 8 (4), S. 1121 - 1127 (2012)
138.
Zeitschriftenartikel
Osorio, S.; Alba, R.; Nikoloski, Z.; Kochevenko, A.; Fernie, A. R.; Giovannoni, J. J.: Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior. Plant Physiology 159 (4), S. 1713 - 1729 (2012)
139.
Zeitschriftenartikel
Paparelli, E.; Gonzali, S.; Parlanti, S.; Novi, G.; Giorgi, F. M.; Licausi, F.; Kosmacz, M.; Feil, R.; Lunn, J. E.; Brust, H. et al.; van Dongen, J. T.; Steup, M.; Perata, P.: Misexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis. Plant Physiology 160 (3), S. 1237 - 1250 (2012)
140.
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Poorter, H.; Fiorani, F.; Stitt, M.; Schurr, U.; Finck, A.; Gibon, Y.; Usadel, B.; Munns, R.; Atkin, O. K.; Tardieu, F. et al.; Pons, T. L.: The art of growing plants for experimental purposes: a practical guide for the plant biologist Review. Functional Plant Biology 39 (10-11), S. 821 - 838 (2012)
141.
Zeitschriftenartikel
Pribil, M.; Armbruster, U.; Rühle, T.; Leister, D.: Identification of novel regulators of plant photosynthesis: current state and open questions. Endocytobiosis and cell research: journal of the International Society of Endocytobiology (23), S. 41 - 51 (2012)
142.
Zeitschriftenartikel
Pyl, E. T.; Piques, M.; Ivakov, A.; Schulze, W.; Ishihara, H.; Stitt, M.; Sulpice, R.: Metabolism and Growth in Arabidopsis Depend on the Daytime Temperature but Are Temperature-Compensated against Cool Nights. Plant Cell 24 (6), S. 2443 - 2469 (2012)
143.
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Ribeiro, D. M.; Araujo, W. L.; Fernie, A. R.; Schippers, J. H. M.; Mueller-Roeber, B.: Action of Gibberellins on Growth and Metabolism of Arabidopsis Plants Associated with High Concentration of Carbon Dioxide. Plant Physiology 160 (4), S. 1781 - 1794 (2012)
144.
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Ribeiro, D. M.; Araujo, W. L.; Fernie, A. R.; Schippers, J. H.; Mueller-Roeber, B.: Translatome and metabolome effects triggered by gibberellins during rosette growth in Arabidopsis. Journal of Experimental Botany 63 (7), S. 2769 - 2786 (2012)
145.
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Riedelsheimer, C.; Czedik-Eysenberg, A.; Grieder, C.; Lisec, J.; Technow, F.; Sulpice, R.; Altmann, T.; Stitt, M.; Willmitzer, L.; Melchinger, A. E.: Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nature Genetics 44 (2), S. 217 - 220 (2012)
146.
Zeitschriftenartikel
Riedelsheimer, C.; Czedik-Eysenberg, A.; Grieder, C.; Lisec, J.; Technow, F.; Sulpice, R.; Altmann, T.; Stitt, M.; Willmitzer, L.; Melchinger, A. E.: Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nature Genetics 44, S. 217 - 220 (2012)
147.
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Riedelsheimer, C.; Lisec, J.; Czedik-Eysenberg, A.; Sulpice, R.; Flis, A.; Grieder, C.; Altmann, T.; Stitt, M.; Willmitzer, L.; Melchinger, A. E.: Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proceedings of the National Academy of Sciences of the United States of America 109 (23), S. 8872 - 8877 (2012)
148.
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Riegler, H.; Herter, T.; Grishkovskaya, I.; Lude, A.; Ryngajllo, M.; Bolger, M. E.; Essigmann, B.; Usadel, B.: Crystal structure and functional characterization of a glucosamine-6-phosphate N-acetyltransferase from Arabidopsis thaliana. Biochemical Journal 443, S. 427 - 437 (2012)
149.
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Riewe, D.; Koohi, M.; Lisec, J.; Pfeiffer, M.; Lippmann, R.; Schmeichel, J.; Willmitzer, L.; Altmann, T.: A tyrosine aminotransferase involved in tocopherol synthesis in Arabidopsis. Plant Journal 71 (5), S. 850 - 859 (2012)
150.
Zeitschriftenartikel
Roach, M.; Gerber, L.; Sandquist, D.; Gorzsas, A.; Hedenstrom, M.; Kumar, M.; Steinhauser, M. C.; Feil, R.; Daniel, G.; Stitt, M. et al.; Sundberg, B.; Niittyla, T.: Fructokinase is required for carbon partitioning to cellulose in aspen wood. Plant Journal 70 (6), S. 967 - 977 (2012)
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