Publications of Z. Nikoloski
All genres
Journal Article (178)
1.
Journal Article
20, pp. 3963 - 3971 (2022)
Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 2.
Journal Article
A comparative analysis of genomic and phenomic predictions of growth-related traits in three-way coffee hybrids. G3: Genes, Genomes, Genetics, jkac170 (2022)
3.
Journal Article
An automated workflow that generates atom mappings for large scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal (2022)
4.
Journal Article
149 (12), dev.200415 (2022)
Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 5.
Journal Article
8 (13), eabl6962 (2022)
The hidden simplicity of metabolic networks is revealed by multireaction dependencies. Science Advances 6.
Journal Article
9, uhac072 (2022)
Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. Horticulture Research 7.
Journal Article
18 (3), e1009906 (2022)
COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions. PLoS Computational Biology 8.
Journal Article
7 (1), e01216-21 (2022)
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis. mSystems 9.
Journal Article
12, 758933 (2021)
Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 10.
Journal Article
8, pp. 78 - 91 (2021)
Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 11.
Journal Article
7 (51), eabi8307 (2021)
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 12.
Journal Article
11 (1), 23776 (2021)
Identification of flux trade-offs in metabolic networks. Scientific Reports 13.
Journal Article
894, pp. 3 - 11 (2021)
Coherent network partitions: Characterizations with cographs and prime graphs. Theoretical computer science 14.
Journal Article
34 (1), pp. 557 - 578 (2021)
Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 15.
Journal Article
19, pp. 5255 - 5263 (2021)
Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient. Computational and Structural Biotechnology Journal 16.
Journal Article
187 (4), pp. 2419 - 2434 (2021)
Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 17.
Journal Article
37 (21), pp. 3848 - 3855 (2021)
Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli. Bioinformatics 18.
Journal Article
44 (10), pp. 3398 - 3411 (2021)
Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment 19.
Journal Article
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal, e106800 (2021)
20.
Journal Article
37 (12), pp. 1717 - 1723 (2021)
GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics