Publications of L. P. de Souza

Journal Article (36)

1.
Journal Article
Rivas, F.J.M.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)
2.
Journal Article
Borghi, M.; de Souza, L. P.; Tohge, T.; Mi, J.; Melandri, G.; Proost, S.; Martins, M.; Al-Babili, S.; Bouwmeester, H.; Fernie, A. R.: High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology (2022)
3.
Journal Article
Simeoni, F.; Skirycz, A.; Simoni, L.; Castorina, G.; de Souza, L. P.; Fernie, A. R.; Alseekh, S.; Giavalisco, P.; Conti, L.; Tonelli, C. et al.; Galbiati, M.: The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Reports 12 (1), 533 (2022)
4.
Journal Article
de Souza, L. P.; Naake, T.; Fernie, A. R.: Computational approaches that aid annotation in metabolomics. Trends in Plant Science (2022)
5.
Journal Article
Candido-Sobrinho, S.; Lima, V.; Freire, F.; de Souza, L. P.; Gago, J.; Fernie, A. R.; Daloso, D.: Metabolism-mediated mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms. Plant, Cell and Environment 45 (2), pp. 296 - 311 (2021)
6.
Journal Article
Machado, M.; Vaz, M. G. M. V.; Bromke, M. A.; Rosa, R. M.; Covell, L.; de Souza, L. P.; Rocha, D. I.; Martins, M. A.; Araújo, W. L.; Szymański, J. et al.; Nunes-Nesi, A.: Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. Algal Research 60, 102554 (2021)
7.
Journal Article
Wang, J. Y.; Alseekh, S.; Xiao, T.; Ablazov, A.; de Souza, L. P.; Fiorilli, V.; Anggarani, M.; Lin, P.-Y.; Votta, C.; Novero, M. et al.; Jamil, M.; Lanfranco, L.; Hsing, Y.-I. C.; Blilou, I.; Fernie, A.; Al-Babili, S.: Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice. Communications Biology 4, 1222 (2021)
8.
Journal Article
Alseekh, S.; Aharoni, A.; Brotman, Y.; Contrepois, K.; D’Auria, J.; Ewald, J.; C. Ewald, J.; Fraser, P. D.; Giavalisco, P.; Hall, R. D. et al.; Heinemann, M.; Link, H.; Luo, J.; Neumann, S.; Nielsen, J.; de Souza, L. P.; Saito, K.; Sauer, U.; Schroeder, F. C.; Schuster, S.; Siuzdak, G.; Skirycz, A.; Sumner, L. W.; Snyder, M. P.; Tang, H.; Tohge, T.; Wang, Y.; Wen, W.; Wu, S.; Xu, G.; Zamboni, N.; Fernie, A. R.: Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18 (7), pp. 747 - 756 (2021)
9.
Journal Article
de Souza, L. P.; Alseekh, S.; Scossa, F.; Fernie, A. R.: Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, pp. 733 - 746 (2021)
10.
Journal Article
Zhang, Y.; Giese, J.; Kerbler, S.M.-L.; Siemiatkowska, B.; de Souza, L. P.; Alpers, J.; Medeiros, D.B.; Hincha, D. K.; Daloso, D. M.; Stitt, M. et al.; Finkemeier, I.; Fernie, A. R.: Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14 (7), pp. 1104 - 1118 (2021)
11.
Journal Article
Bottcher, A.; Domingues Júnior, A.P.; de Souza, L. P.; Tohge, T.; Araujo, W. L.; Fernie, A. R.; Mazzafera, P.: Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, e2921 (2021)
12.
Journal Article
Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)
13.
Journal Article
Omidbakhshfard, M. A.; Sokolowska, E.; Di Vittori, V.; de Souza, L. P.; Kuhalskaya, A.; Brotman, Y.; Alseekh, S.; Fernie, A. R.; Skirycz, A.: Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2 (4), 100235 (2021)
14.
Journal Article
Feitosa-Araujo, E.; da Fonseca Pereira, P.; Miranda Pena, M.; Medeiros, D.B.; de Souza, L. P.; Yoshida, T.; Weber, A. P.M.; Araújo, W. L.; Fernie, A. R.; Schwarzländer, M. et al.; Nunes-Nesi, A.: Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner. The Plant Journal (2020)
15.
Journal Article
Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)
16.
Journal Article
Alves, R. D. F. B.; Menezes-Silva, P. E.; Sousa, L. F.; Loram-Lourenco, L.; Silva, M. L. F.; Almeida, S. E. S.; Silva, F. G.; de Souza, L. P.; Fernie, A. R.; Farnese, F. S.: Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions. Scientific Reports 10 (1), 16455 (2020)
17.
Journal Article
de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)
18.
Journal Article
de Souza, L. P.; Borghi, M.; Fernie, A. R.: Plant single‐cell metabolomics—challenges and perspectives. International Journal of Molecular Sciences 21 (23), pp. 1 - 17 (2020)
19.
Journal Article
de Souza, L. P.; Garbowicz, K.; Brotman, Y.; Tohge, T.; Fernie, A. R.: The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182 (2), pp. 857 - 869 (2020)
20.
Journal Article
Kuhalskaya, A.; Wijesingha Ahchige, M.; de Souza, L. P.; Vallarino, J. G.; Brotman, Y.; Alseekh, S.: Network analysis provides insight into tomato lipid metabolism. Metabolites 10 (4), 152 (2020)
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