Publications of Sebastian Proost

Journal Article (18)

Journal Article
Julca, I.; Ferrari, C.; Flores-Tornero, M.; Proost, S.; Lindner, A.-C.; Hackenberg, D.; Steinbachová, L.; Michaelidis, C.; Gomes Pereira, S.; Misra, C. S. et al.; Kawashima, T.; Borg, M.; Berger, F.; Goldberg, J.; Johnson, M.; Honys, D.; Twell, D.; Sprunck, S.; Dresselhaus, T.; Becker, J. D.; Mutwil, M.: Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, pp. 1143 - 1159 (2021)
Journal Article
Sujeeth, N.; Mehterov, N.; Gupta, S.; Qureshi, M. K.; Fischer, A.; Proost, S.; Omidbakhshfard, M. A.; Obata, T.; Benina, M.; Staykov, N. et al.; Balazadeh, S.; Walther, D.; Fernie, A. R.; Mueller-Roeber, B.; Hille, J.; Gechev, T. S.: A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, pp. 705 - 718 (2020)
Journal Article
de Souza, L. P.; Scossa, F.; Proost, S.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97 (6), pp. 1132 - 1153 (2019)
Journal Article
Ferrari, C.; Proost, S.; Janowski, M.; Becker, J.; Nikoloski, Z.; Bhattacharya, D.; Price, D.; Tohge, T.; Bar-Even, A.; Fernie, A. R. et al.; Stitt, M.; Mutwil, M.: Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, 737 (2019)
Journal Article
Flores-Tornero, M.; Proost, S.; Mutwil, M.; Scutt, C. P.; Dresselhaus, T.; Sprunck, S.: Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells. Plant Reproduction 32 (1-SI), pp. 15 - 27 (2019)
Journal Article
Rosado-Souza, L.; Proost, S.; Moulin, M.; Bergmann, S.; Bocobza, S. E.; Aharoni, A.; Fitzpatrick, T. B.; Mutwil, M.; Fernie, A. R.; Obata, T.: Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod. Plant Physiology 180 (1), pp. 185 - 197 (2019)
Journal Article
Janowski, M.; Zoschke, R.; Scharff, L. B.; Martinez-Jaime, S.; Ferrari, C.; Proost, S.; Ng Wei Xiong, J.; Omranian, N.; Musialak-Lange, M.; Nikoloski, Z. et al.; Graf, A.; Schöttler, M. A.; Sampathkumar, A.; Vaid, N.; Mutwil, M.: AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96 (2), pp. 404 - 420 (2018)
Journal Article
Ferrari, C.; Proost, S.; Ruprecht, C.; Mutwil, M.: PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research 46 (W1), pp. W76 - W83 (2018)
Journal Article
Proost, S.; Mutwil, M.: CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. Nucleic Acids Research 46 (W1), pp. W133 - W140 (2018)
Journal Article
Proost, S.; Krawczyk, A.; Mutwil, M.: LSTrAP: efficiently combining RNA sequencing data into co-expression networks. BMC Bioinformatics 18 (1), 444 (2017)
Journal Article
Ruprecht, C.; Proost, S.; Hernandez-Coronado, M.; Ortiz-Ramirez, C.; Lang, D.; Rensing, S. A.; Becker, J. D.; Vandepoele, K.; Mutwil, M.: Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90 (3), pp. 447 - 465 (2017)
Journal Article
Ruprecht, C.; Vaid, N.; Proost, S.; Persson, S.; Mutwil, M.: Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22 (4), pp. 298 - 307 (2017)
Journal Article
Sibout, R.; Proost, S.; Hansen, B. O.; Vaid, N.; Giorgi, F. M.; Ho-Yue-Kuang, S.; Legee, F.; Cezart, L.; Bouchabke-Coussa, O.; Soulhat, C. et al.; Provart, N.; Pasha, A.; Le Bris, P.; Roujol, D.; Hofte, H.; Jamet, E.; Lapierre, C.; Persson, S.; Mutwil, M.: Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytologist 215 (3), pp. 1009 - 1025 (2017)
Journal Article
Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)
Journal Article
Proost, S.; Mutwil, M.: Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology 30, pp. 143 - 150 (2016)
Journal Article
Omidbakhshfard, M. A.; Proost, S.; Fujikura, U.; Mueller-Roeber, B.: Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Molecular Plant 8 (7), pp. 998 - 1010 (2015)
Journal Article
Proost, S.; Van Bel, M.; Vaneechoutte, D.; Van de Peer, Y.; Inze, D.; Mueller-Roeber, B.; Vandepoele, K.: PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Research 43 (Database issue), pp. D974 - D981 (2015)
Journal Article
Balazadeh, S.; Schildhauer, J.; Araujo, W. L.; Munne-Bosch, S.; Fernie, A. R.; Proost, S.; Humbeck, K.; Mueller-Roeber, B.: Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65 (14), pp. 3975 - 3992 (2014)

Book Chapter (1)

Book Chapter
Proost, S.; Mutwil, M.: PlaNet: Comparative Co-Expression Network Analyses for Plants. In: Plant Genomics Databases: Methods and Protocols, Vol. 1533, pp. 213 - 227 (Eds. van Dijk; D.J, A.). Springer New York, New York, NY (2017)
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