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Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)

de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)

de Souza, L. P.; Garbowicz, K.; Brotman, Y.; Tohge, T.; Fernie, A. R.: The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182 (2), pp. 857 - 869 (2020)

Kuhalskaya, A.; Wijesingha Ahchige, M.; de Souza, L. P.; Vallarino, J. G.; Brotman, Y.; Alseekh, S.: Network analysis provides insight into tomato lipid metabolism. Metabolites 10 (4), 152 (2020)

Salem, M. A.; de Souza, L. P.; Serag, A.; Fernie, A. R.; Farag, M. A.; Ezzat, S. M.; Alseekh, S.: Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis. Metabolites 10 (1), 37 (2020)

Salem, M.A.; Yoshida, T.; de Souza, L. P.; Alseekh, S.; Bajdzienko, K.; Fernie, A. R.; Giavalisco, P.: An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103 (4), pp. 1614 - 1632 (2020)

Domingues Júnior, A.P.; Daloso, D. M.; Machado, M.; Rosado-Souza, L.; de Souza, L. P.; Fernie, A. R.; Mazzafera, P.: A cold change: how short low temperature exposure affects primary metabolism in leaves and stems of two eucalyptus species. Theoretical and Experimental Plant Physiology 31 (4), pp. 429 - 444 (2019)

de Souza, L. P.; Scossa, F.; Proost, S.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97 (6), pp. 1132 - 1153 (2019)

Borghi, M.; de Souza, L. P.; Yoshida, T.; Fernie, A. R.: Flowers and climate change: a metabolic perspective. New Phytologist 224 (4), pp. 1425 - 1441 (2019)

de Souza, L. P.; Alseekh, S.; Naake, T.; Fernie, A. R.: Mass Spectrometry-Based Untargeted Plant Metabolomics. Current Protocols in Plant Biology 4 (4), e20100 (2019)

Lima, V. F.; Anjos, L. d.; Medeiros, D.B.; Cândido-Sobrinho, S. A.; de Souza, L. P.; Gago, J.; Fernie, A. R.; Daloso, D. M.: The sucrose-to-malate ratio correlates with the faster CO2 and light stomatal responses of angiosperms compared to ferns. New Phytologist 223 (4), pp. 1873 - 1887 (2019)

Lima, V. F.; de Souza, L. P.; Williams, T. C. R.; Fernie, A. R.; Daloso, D. M.: Gas Chromatography–Mass Spectrometry-Based 13C-Labeling Studies in Plant Metabolomics. Methods in Molecular Biology 1778, pp. 47 - 58 (2018)

Medeiros, D.B.; de Souza, L. P.; Antunes, W. C.; Araujo, W. L.; Daloso, D. M.; Fernie, A. R.: Sucrose breakdown within guard cells provides substrates for glycolysis and glutamine biosynthesis during light-induced stomatal opening. The Plant Journal 94 (4), pp. 583 - 594 (2018)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress. Phytochemistry Reviews 17 (2 ), pp. 279 - 290 (2018)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants (vol 68, pg 4013, 2017). Journal of Experimental Botany 69 (18), p. 4497 - 4497 (2018)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Corrigendum: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants. Journal of Experimental Botany 69 (18), 4497 (2018)

de Souza, L. P.; Naake, T.; Tohge, T.; Fernie, A. R.: From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6 (7), pp. 1 - 20 (2017)

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants. Journal of Experimental Botany 68 (15), pp. 4013 - 4028 (2017)

Pham, P. A.; Wahl, V.; Tohge, T.; de Souza, L. P.; Zhang, Y.; Do, P. T.; Olas, J. J.; Stitt, M.; Araujo, W. L.; Fernie, A. R.: Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis. Plant Molecular Biology 89 (4-5), pp. 319 - 338 (2015)

Schwahn, K.; de Souza, L. P.; Fernie, A. R.; Tohge, T.: Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56 (9), pp. 864 - 875 (2014)