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de Souza, L. P.; Alseekh, S.; Scossa, F.; Fernie, A. R.: Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, pp. 733 - 746 (2021)

Scossa, F.; Fernie, A. R.: When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science 26 (6), pp. 543 - 545 (2021)

Gill, R. A.; Scossa, F.; King, G. J.; Golicz, A.; Tong, C.; Snowdon, R. J.; Fernie, A. R.; Liu, S.: On the Role of Transposable Elements in the Regulation of Gene Expression and Subgenomic Interactions in Crop Genomes. Critical Reviews in Plant Sciences 40 (2), pp. 157 - 189 (2021)

Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)

Scossa, F.; Fernie, A. R.: Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, pp. 1579 - 1594 (2021)

Zhang, W.; Luo, C.; Scossa, F.; Zhang, Q.; Usadel, B.; Fernie, A. R.; Mei, H.; Wen, W.: A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants. The Plant Journal 105 (1), pp. 197 - 208 (2021)

Alseekh, S.; Scossa, F.; Fernie, A. R.: Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25 (11), pp. 1062 - 1064 (2020)

Karagiannis, E.; Michailidis, M.; Tanou, G.; Scossa, F.; Sarrou, E.; Stamatakis, G.; Samiotaki, M.; Martens, S.; Fernie, A. R.; Molassiotis, A.: Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Horticulture Research 7 (1), 120 (2020)

Karagiannis, E.; Tanou, G.; Scossa, F.; Samiotaki, M.; Michailidis, M.; Manioudaki, M.; Laurens, F.; Job, D.; Fernie, A. R.; Orsel, M. et al.; Molassiotis, A.: Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science 11, 8 (2020)

Scossa, F.; Fernie, A. R.: The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, pp. 482 - 500 (2020)

Tohge, T.; Scossa, F.; Wendenburg, R.; Frasse, P.; Balbo, I.; Watanabe, M.; Alseekh, S.; Jadha, S. S.; Delfin, J. C.; Lohse, M. et al.; Giavalisco, P.; Usadel, B.; Zhang, Y.; Luo, J.; Bouzayen, M.; Fernie, A. R.: Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13 (7), pp. 1027 - 1046 (2020)

Zhang, W.; Zhang, Y.; Qiu, H.; Guo, Y.; Wan, H.; Zhang, X.; Scossa, F.; Alseekh, S.; Zhang, Q.; Wang, P. et al.; Xu, L.; Schmidt, M.H.-W.; Jia, X.; Li, D.; Zhu, A.; Guo, F.; Chen, W.; Ni, D.; Usadel, B.; Fernie, A. R.; Wen, W.: Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11 (1), 3719 (2020)

de Souza, L. P.; Scossa, F.; Proost, S.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97 (6), pp. 1132 - 1153 (2019)

Scossa, F.; Roda, F.; Tohge, T.; Georgiev, M.I.; Fernie, A. R.: The Hot and the Colorful: Understanding the Metabolism, Genetics and Evolution of Consumer Preferred Metabolic Traits in Pepper and Related Species. Critical Reviews in Plant Sciences 38 (5-6), pp. 339 - 381 (2019)

Kou, S.; Chen, L.; Tu, W.; Scossa, F.; Wang, Y.; Liu, J.; Fernie, A. R.; Song, B.; Xie, C.: The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses. The Plant Journal 96 (6), pp. 1283 - 1298 (2018)

Scossa, F.; Benina, M.; Alseekh, S.; Zhang, Y.; Fernie, A. R.: The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants. Planta Media 84 (12-13 SI), pp. 855 - 873 (2018)

Scossa, F.; Fernie, A. R.: How fruit ripening is ENCODEd. Nature Plants 4 (10), pp. 744 - 745 (2018)

Shnaider, Y.; Mitra, D.; Miller, G.; Baniel, A.; Doniger, T.; Kuhalskaya, A.; Scossa, F.; Fernie, A. R.; Brotman, Y.; Perl-Treves, R.: Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries. The Plant Journal 96 (3), pp. 651 - 669 (2018)

Zhang, Y.; Swart, C.; Alseekh, S.; Scossa, F.; Jiang, L.; Obata, T.; Graf, A.; Fernie, A. R.: The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Plant Physiology 177 (3), pp. 966 - 979 (2018)

Alseekh, S.; Tong, H. (Mathematical Modelling and Systems Biology - Nikoloski, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society), H.; Scossa, F.; Brotman, Y.; Vigroux, F.; Tohge, T.; Ofner, I.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Canalization of Tomato Fruit Metabolism. Plant Cell 29 (11), pp. 2753 - 2765 (2017)