Publications of B. Mueller-Roeber

Balazadeh, S., Wu, A. & Mueller-Roeber, B. Salt-triggered expression of the ANAC092-dependent senescence regulon in Arabidopsis thaliana. Plant Signaling & Behavior 5, 733–735 (2010).

Dortay, H. & Mueller-Roeber, B. A highly efficient pipeline for protein expression in Leishmania tarentolae using infrared fluorescence protein as marker. Microbial Cell Factories 9, 29 (2010).

Krebs, J., Mueller-Roeber, B. & Ruzicic, S. A novel bipartite nuclear localization signal with an atypically long linker in DOF transcription factors. Journal of Plant Physiology 167, 583–586 (2010).

Lang, D., Weiche, B., Timmerhaus, G., Richardt, S., Riano-Pachon, D. M., Correa, L. G. G., Reski, R., Mueller-Roeber, B. & Rensing, S. A. Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity. Genome Biology and Evolution 2, 488–503 (2010).

Perez-Rodriguez, P., Riano-Pachon, D. M., Correa, L. G. G., Rensing, S. A., Kersten, B. & Mueller-Roeber, B. PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Research 38, D822–D827 (2010).

Riedelsberger, J., Sharma, T., Gonzalez, W., Gajdanowicz, P., Morales-Navarro, S. E., Garcia-Mata, C., Mueller-Roeber, B., Gonzalez-Nilo, F. D., Blatt, M. R. & Dreyer, I. Distributed Structures Underlie Gating Differences between the K-in Channel KAT1 and the K-out Channel SKOR. Molecular Plant 3, 236–245 (2010).

Gajdanowicz, P., Garcia-Mata, C., Gonzalez, W., Morales-Navarro, S. E., Sharma, T., Gonzalez-Nilo, F. D., Gutowicz, J., Mueller-Roeber, B., Blatt, M. R. & Dreyer, I. Distinct roles of the last transmembrane domain in controlling Arabidopsis K+ channel activity. New Phytologist 182, 380–391 (2009).

Riano-Pachon, D. M., Nagel, A., Neigenfind, J., Wagner, R., Basekow, R., Weber, E., Mueller-Roeber, B., Diehl, S. & Kersten, B. GabiPD: the GABI primary database-a plant integrative 'omics' database. Nucleic Acids Research 37, 954–959 (2009).

Szarzynska, B., Sobkowiak, L., Pant, B. D., Balazadeh, S., Scheible, W.-R., Mueller-Roeber, B., Jarmolowski, A. & Szweykowska-Kulinska, Z. Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Research 37, 3083–3093 (2009).

Arvidsson, S., Kwasniewski, M., Riano-Pachon, D. M. & Mueller-Roeber, B. QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9, 465 (2008).

Balazadeh, S., Parlitz, S., Mueller-Roeber, B. & Meyer, R. C. Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biology (Stuttgart, Germany) 10 Suppl 1, 136–147 (2008).

Correa, L. G., Riano-Pachon, D. M., Schrago, C. G., dos Santos, R. V., Mueller-Roeber, B. & Vincentz, M. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 3, e2944 (2008).

Falkenberg, B., Witt, I., Zanor, M. I., Steinhauser, D., Mueller-Roeber, B., Hesse, H. & Hoefgen, R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59, 2831–2846 (2008).

Riano-Pachon, D. M., Correa, L. G. G., Trejos-Espinosa, R. & Mueller-Roeber, B. Green transcription factors: A Chlamydomonas overview. Genetics 179, 31–39 (2008).

Scarpeci, T. E., Zanor, M. I., Carrillo, N., Mueller-Roeber, B. & Valle, E. M. Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes. Plant Molecular Biology 66, 361–378 (2008).

Skirycz, A., Radziejwoski, A., Busch, W., Hannah, M. A., Czeszejko, J., Kwasniewski, M., Zanor, M. I., Lohmann, J. U., De Veylder, L., Witt, I. & Mueller-Roeber, B. The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. The Plant Journal 56, 779–792 (2008).

Yang, L., Tang, R., Zhu, J., Liu, H., Mueller-Roeber, B., Xia, H. & Zhang, H. Enhancement of stress tolerance in transgenic tobacco plants constitutively expressing AtIpk2beta, an inositol polyphosphate 6-/3-kinase from Arabidopsis thaliana. Plant Molecular Biology 66, 329–343 (2008).

Caldana, C., Scheible, W.-R., Mueller-Roeber, B. & Ruzicic, S. A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, 7 (2007).

Gomez-Porras, J. L., Riano-Pachon, D. M., Dreyer, I., Mayer, J. E. & Mueller-Roeber, B. Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics 8, 260 (2007).

Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., Terry, A., Salamov, A., Fritz-Laylin, L. K., Marechal-Drouard, L., Marshall, W. F., Qu, L. H., Nelson, D. R., Sanderfoot, A. A., Spalding, M. H., Kapitonov, V. V., Ren, Q., Ferris, P., Lindquist, E., Shapiro, H., Lucas, S. M., Grimwood, J., Schmutz, J., Cardol, P., Cerutti, H., Chanfreau, G., Chen, C. L., Cognat, V., Croft, M. T., Dent, R., Dutcher, S., Fernandez, E., Fukuzawa, H., Gonzalez-Ballester, D., Gonzalez-Halphen, D., Hallmann, A., Hanikenne, M., Hippler, M., Inwood, W., Jabbari, K., Kalanon, M., Kuras, R., Lefebvre, P. A., Lemaire, S. D., Lobanov, A. V., Lohr, M., Manuell, A., Meier, I., Mets, L., Mittag, M., Mittelmeier, T., Moroney, J. V., Moseley, J., Napoli, C., Nedelcu, A. M., Niyogi, K., Novoselov, S. V., Paulsen, I. T., Pazour, G., Purton, S., Ral, J. P., Riano-Pachon, D. M., Riekhof, W., Rymarquis, L., Schroda, M., Stern, D., Umen, J., Willows, R., Wilson, N., Zimmer, S. L., Allmer, J., Balk, J., Bisova, K., Chen, C. J., Elias, M., Gendler, K., Hauser, C., Lamb, M. R., Ledford, H., Long, J. C., Minagawa, J., Page, M. D., Pan, J., Pootakham, W., Roje, S., Rose, A., Stahlberg, E., Terauchi, A. M., Yang, P., Ball, S., Bowler, C., Dieckmann, C. L., Gladyshev, V. N., Green, P., Jorgensen, R., Mayfield, S., Mueller-Roeber, B., Rajamani, S., Sayre, R. T. & Brokstein, P. et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245–250 (2007).