Publications of Y. Gibon

Armengaud, P., Sulpice, R., Miller, A. J., Stitt, M., Amtmann, A. & Gibon, Y. Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots. Plant Physiology 150, 772–785 (2009).

Gibon, Y., Pyl, E. T., Sulpice, R., Lunn, J. E., Hoehne, M., Guenther, M. & Stitt, M. Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell and Environment 32, 859–874 (2009).

Hannemann, J., Poorter, H., Usadel, B., Blaesing, O. E., Finck, A., Tardieu, F., Atkin, O. K., Pons, T., Stitt, M. & Gibon, Y. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment 32, 1185–1200 (2009).

Ott, T., Sullivan, J., James, E. K., Flemetakis, E., Gunther, C., Gibon, Y., Ronson, C. & Udvardi, M. K. Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules. Molecular Plant-Microbe Interactions 22, 800–808 (2009).

Piques, M., Schulze, W. X., Hoehne, M., Usadel, B., Gibon, Y., Rohwer, J. & Stitt, M. Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology 5, 314 (2009).

Sulpice, R., Pyl, E. T., Ishihara, H., Trenkamp, S., Steinfath, M., Witucka-Wall, H., Gibon, Y., Usadel, B., Poree, F., Piques, M. C., von Korff, M., Steinhauser, M.-C., Keurentjes, J. J. B., Guenther, M., Hoehne, M., Selbig, J., Fernie, A. R., Altmann, T. & Stitt, M. Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106, 10348–10353 (2009).

Keurentjes, J. J. B., Sulpice, R., Gibon, Y., Steinhauser, M.-C., Fu, J. Y., Koornneef, M., Stitt, M. & Vreugdenhil, D. Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9, R129 (2008).

Leboeuf, E., Immerzeel, P., Gibon, Y., Steup, M. & Pauly, M. High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373, 9–17 (2008).

Nunes-Nesi, A., Sulpice, R., Gibon, Y. & Fernie, A. R. The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany 59, 1675–1684 (2008).

Usadel, B., Blaesing, O. E., Gibon, Y., Retzlaff, K., Hoehne, M., Guenther, M. & Stitt, M. Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146, 1834–1861 (2008).

Ainsworth, E. A., Rogers, A., Leakey, A. D. B., Heady, L. E., Gibon, Y., Stitt, M. & Schurr, U. Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? Journal of Experimental Botany 58, 579–591 (2007).

Huege, J., Sulpice, R., Gibon, Y., Lisec, J., Koehl, K. I. & Kopka, J. GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68, 2258–2272 (2007).

Morcuende, R., Bari, R., Gibon, Y., Zheng, W., Pant, B. D., Blaesing, O., Usadel, B., Czechowski, T., Udvardi, M. K., Stitt, M. & Scheible, W.-R. Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell and Environment 30, 85–112 (2007).

Nunes-Nesi, A., Carrari, F., Gibon, Y., Sulpice, R., Lytovchenko, A., Fisahn, J., Graham, J., Ratcliffe, R. G., Sweetlove, L. J. & Fernie, A. R. Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50, 1093–1106 (2007).

Osuna, D., Usadel, B., Morcuende, R., Gibon, Y., Blaesing, O. E., Hoehne, M., Gunter, M., Kamlage, B., Trethewey, R., Scheible, W.-R. & Stitt, M. Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49, 463–491 (2007).

Sulpice, R., Tschoep, H., von Korff, M., Buessis, D., Usadel, B., Hoehne, M., Witucka-Wall, H., Altmann, T., Stitt, M. & Gibon, Y. Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment 30, 1163–1175 (2007).

Cross, J. M., von Korff, M., Altmann, T., Bartzetko, L., Sulpice, R., Gibon, Y., Palacios, N. & Stitt, M. Variation of enzyme activities and metabolite levels in 24 arabidopsis accessions growing in carbon-limited conditions. Plant Physiology 142, 1574–1588 (2006).

Gibon, Y., Usadel, B., Blaesing, O. E., Kamlage, B., Hoehne, M., Trethewey, R. & Stitt, M. Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7, R76 (2006).

Lunn, J. E., Feil, R., Hendriks, J. H. M., Gibon, Y., Morcuende, R., Osuna, D., Scheible, W.-R., Carillo, P., Hajirezaei, M.-R. & Stitt, M. Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochemical Journal 397, 139–148 (2006).

Rogers, A., Gibon, Y., Stitt, M., Morgan, P. B., Bernacchi, C. J., Ort, D. R. & Long, S. P. Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume. Plant Cell and Environment 29, 1651–1658 (2006).