Publications of J. Kopka

Journal Article (217)

201.
Journal Article
Steinhauser, D., Junker, B. H., Luedemann, A., Selbig, J. & Kopka, J. Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20, 1928–1939 (2004).
202.
Journal Article
Steinhauser, D., Usadel, B., Luedemann, A., Thimm, O. & Kopka, J. CSB.DB: a comprehensive systems-biology database. Bioinformatics 20, 3647–3651 (2004).
203.
Journal Article
Birkemeyer, C., Kolasa, A. & Kopka, J. Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993, 89–102 (2003).
204.
Journal Article
Hunt, L., Mills, L. N., Pical, C., Leckie, C. P., Aitken, F. L., Kopka, J., Mueller-Roeber, B., McAinsh, M. R., Hetherington, A. M. & Gray, J. E. Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34, 47–55 (2003).
205.
Journal Article
Urbanczyk-Wochniak, E., Luedemann, A., Kopka, J., Selbig, J., Roessner-Tunali, U., Willmitzer, L. & Fernie, A. R. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4, 989–993 (2003).
206.
Journal Article
Wagner, C., Sefkow, M. & Kopka, J. Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62, 887–900 (2003).
207.
Journal Article
Bohmert, K., Balbo, I., Kopka, J., Mittendorf, V., Nawrath, C., Poirier, Y., Tischendorf, G., Trethewey, R. N. & Willmitzer, L. Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211, 841–845 (2000).
208.
Journal Article
Fiehn, O., Kopka, J., Doermann, P., Altmann, T., Trethewey, R. N. & Willmitzer, L. Metabolite profiling for plant functional genomics. Nature Biotechnology 18, 1157–1161 (2000).
209.
Journal Article
Fiehn, O., Kopka, J., Trethewey, R. N. & Willmitzer, L. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Analytical Chemistry 72, 3573–3580 (2000).
210.
Journal Article
Roessner, U., Wagner, C., Kopka, J., Trethewey, R. N. & Willmitzer, L. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23, 131–142 (2000).
211.
Journal Article
Aitken, F. L., Pical, C., Mueller-Roeber, B., Kopka, J. & Gray, J. E. Phosphoinositide signal transduction in guard cells. Biochemical Society Transactions 26, S397 (1998).
212.
Journal Article
Kopka, J., Pical, C., Gray, J. E. & Mueller-Roeber, B. Molecular and enzymatic characterization of three phosphoinositide-specific phospholipase C isoforms from potato. Plant Physiology 116, 239–250 (1998).
213.
Journal Article
Kopka, J., Pical, C., Hetherington, A. M. & Mueller-Roeber, B. Ca2+/phospholipid-binding (C-2) domain in multiple plant proteins: novel components of the calcium-sensing apparatus. Plant Molecular Biology 36, 627–637 (1998).
214.
Journal Article
Kopka, J., Ludewig, M. & Mueller-Roeber, B. Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Plant Physiology 113, 997–1002 (1997).
215.
Journal Article
Kopka, J., Provart, N. J. & Mueller-Roeber, B. Potato guard cells respond to drying soil by a complex change in the expression of genes related to carbon metabolism and turgor regulation. Plant Journal 11, 871–882 (1997).
216.
Journal Article
Kopka, J., Ohlrogge, J. B. & Jaworski, J. G. Analysis of in-Vivo Levels of Acyl-Thioesters with Gas-Chromatography Mass-Spectrometry of the Butylamide Derivative. Analytical Biochemistry 224, 51–60 (1995).
217.
Journal Article
Kopka, J., Robers, M., Schuch, R. & Spener, F. Acyl Carrier Proteins from Developing Seeds of Cuphea-Lanceolata Ait. Planta 191, 102–111 (1993).

Book Chapter (21)

218.
Book Chapter
Erban, A., Martinez-Seidel, F., Rajarathinam, Y., Dethloff, F., Orf, I., Fehrle, I., Alpers, J., Beine-Golovchuk, O. & Kopka, J. in Plant Cold Acclimation: Methods in molecular biology (eds. Hincha, D. K. & Zuther, E.) 2156, 203–239 (2020).
219.
Book Chapter
Vallarino, J. G., Erban, A., Fehrle, I., Fernie, A. R., Kopka, J. & Osorio, S. in Methods in Molecular Biology (ed. António, C.) 1778, 225–240 (Humana Press, 2018).
220.
Book Chapter
Watanabe, M., Tohge, T., Balazadeh, S., Erban, A., Giavalisco, P., Kopka, J., Mueller-Roeber, B., Fernie, A. R. & Hoefgen, R. in Plant Senescence: Methods and Protocols (ed. Guo, Y.) 339–358 (Springer New York, 2018). doi:10.1007/978-1-4939-7672-0_28
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