Publications of J. Kopka

Steinhauser, D., Junker, B. H., Luedemann, A., Selbig, J. & Kopka, J. Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20, 1928–1939 (2004).

Steinhauser, D., Usadel, B., Luedemann, A., Thimm, O. & Kopka, J. CSB.DB: a comprehensive systems-biology database. Bioinformatics 20, 3647–3651 (2004).

Birkemeyer, C., Kolasa, A. & Kopka, J. Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993, 89–102 (2003).

Hunt, L., Mills, L. N., Pical, C., Leckie, C. P., Aitken, F. L., Kopka, J., Mueller-Roeber, B., McAinsh, M. R., Hetherington, A. M. & Gray, J. E. Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34, 47–55 (2003).

Urbanczyk-Wochniak, E., Luedemann, A., Kopka, J., Selbig, J., Roessner-Tunali, U., Willmitzer, L. & Fernie, A. R. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4, 989–993 (2003).

Wagner, C., Sefkow, M. & Kopka, J. Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62, 887–900 (2003).

Bohmert, K., Balbo, I., Kopka, J., Mittendorf, V., Nawrath, C., Poirier, Y., Tischendorf, G., Trethewey, R. N. & Willmitzer, L. Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211, 841–845 (2000).

Fiehn, O., Kopka, J., Doermann, P., Altmann, T., Trethewey, R. N. & Willmitzer, L. Metabolite profiling for plant functional genomics. Nature Biotechnology 18, 1157–1161 (2000).

Fiehn, O., Kopka, J., Trethewey, R. N. & Willmitzer, L. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Analytical Chemistry 72, 3573–3580 (2000).

Roessner, U., Wagner, C., Kopka, J., Trethewey, R. N. & Willmitzer, L. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23, 131–142 (2000).

Aitken, F. L., Pical, C., Mueller-Roeber, B., Kopka, J. & Gray, J. E. Phosphoinositide signal transduction in guard cells. Biochemical Society Transactions 26, S397 (1998).

Kopka, J., Pical, C., Gray, J. E. & Mueller-Roeber, B. Molecular and enzymatic characterization of three phosphoinositide-specific phospholipase C isoforms from potato. Plant Physiology 116, 239–250 (1998).

Kopka, J., Pical, C., Hetherington, A. M. & Mueller-Roeber, B. Ca2+/phospholipid-binding (C-2) domain in multiple plant proteins: novel components of the calcium-sensing apparatus. Plant Molecular Biology 36, 627–637 (1998).

Kopka, J., Ludewig, M. & Mueller-Roeber, B. Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Plant Physiology 113, 997–1002 (1997).

Kopka, J., Provart, N. J. & Mueller-Roeber, B. Potato guard cells respond to drying soil by a complex change in the expression of genes related to carbon metabolism and turgor regulation. Plant Journal 11, 871–882 (1997).

Kopka, J., Ohlrogge, J. B. & Jaworski, J. G. Analysis of in-Vivo Levels of Acyl-Thioesters with Gas-Chromatography Mass-Spectrometry of the Butylamide Derivative. Analytical Biochemistry 224, 51–60 (1995).

Kopka, J., Robers, M., Schuch, R. & Spener, F. Acyl Carrier Proteins from Developing Seeds of Cuphea-Lanceolata Ait. Planta 191, 102–111 (1993).

Erban, A., Martinez-Seidel, F., Rajarathinam, Y., Dethloff, F., Orf, I., Fehrle, I., Alpers, J., Beine-Golovchuk, O. & Kopka, J. in Plant Cold Acclimation: Methods in molecular biology (eds. Hincha, D. K. & Zuther, E.) 2156, 203–239 (2020).

Vallarino, J. G., Erban, A., Fehrle, I., Fernie, A. R., Kopka, J. & Osorio, S. in Methods in Molecular Biology (ed. António, C.) 1778, 225–240 (Humana Press, 2018).

Watanabe, M., Tohge, T., Balazadeh, S., Erban, A., Giavalisco, P., Kopka, J., Mueller-Roeber, B., Fernie, A. R. & Hoefgen, R. in Plant Senescence: Methods and Protocols (ed. Guo, Y.) 339–358 (Springer New York, 2018). doi:10.1007/978-1-4939-7672-0_28