Publications of J. Kopka
All genres
Journal Article (230)
201.
Journal Article
Kopka, J. & Udvardi, M. K. Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiology 137, 1302–1318 (2005).
, 202.
Journal Article
Kopka, J., Schauer, N., , , Usadel, B., Bergmueller, E., Doermann, P., Weckwerth, W., Gibon, Y., Stitt, M., Willmitzer, L., Fernie, A. R. & Steinhauser, D. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21, 1635–1638 (2005).
203.
Journal Article
Lisso, J., Steinhauser, D., Altmann, T., Kopka, J. & Muessig, C. Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33, 2685–2696 (2005).
204.
Journal Article
Kopka, J., & Organization and metabolism of plastids and mitochondria in arbuscular mycorrhizal roots of Medicago truncatula. Plant Physiology 139, 329–340 (2005).
, , , 205.
Journal Article
Kopka, J., Tolstikov, V., Fiehn, O., , , Hesse, H. & Hoefgen, R. Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of arabidopsis plants. Plant Physiology 138, 304–318 (2005).
, 206.
Journal Article
Steinhauser, D., Buessis, D., , , Kopka, J. & Altmann, T. Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1, e40 (2005).
, 207.
Journal Article
Schauer, N., Steinhauser, D., , , , , , Roessner-Tunali, U., , Willmitzer, L., Fernie, A. R. & Kopka, J. GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579, 1332–1337 (2005).
208.
Journal Article
Scholz, M., , , Kopka, J. & Selbig, J. Non-linear PCA: a missing data approach. Bioinformatics 21, 3887–3895 (2005).
209.
Journal Article
Urbanczyk-Wochniak, E., , , Kopka, J., & Fernie, A. R. Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221, 891–903 (2005).
210.
Journal Article
Fiehn, O., Kopka, J., , , , , Roessner-Tunali, U., , Trethewey, R. N., , & Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9, 418–425 (2004).
, , 211.
Journal Article
Fiehn, O., , , , Kopka, J., , , , , , , , , Roessner-Tunali, U., , , , , , & A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology 22, 1601–1606 (2004).
, , , , , , 212.
Journal Article
Kopka, J., , , , Gatzke, N., & Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiology 136, 4159–4168 (2004).
, 213.
Journal Article
Klotke, J., Kopka, J., Gatzke, N. & Heyer, A. G. Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation. Plant Cell and Environment 27, 1395–1404 (2004).
214.
Journal Article
Luedemann, A., Weicht, D., Selbig, J. & Kopka, J. PaVESy: Pathway visualization and editing system. Bioinformatics 20, 2841–2844 (2004).
215.
Journal Article
Steinhauser, D., , Luedemann, A., Selbig, J. & Kopka, J. Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20, 1928–1939 (2004).
216.
Journal Article
Steinhauser, D., Usadel, B., Luedemann, A., Thimm, O. & Kopka, J. CSB.DB: a comprehensive systems-biology database. Bioinformatics 20, 3647–3651 (2004).
217.
Journal Article
Kolasa, A. & Kopka, J. Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993, 89–102 (2003).
, 218.
Journal Article
Kopka, J., Mueller-Roeber, B., , & Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34, 47–55 (2003).
, , , , , 219.
Journal Article
Urbanczyk-Wochniak, E., Luedemann, A., Kopka, J., Selbig, J., Roessner-Tunali, U., Willmitzer, L. & Fernie, A. R. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4, 989–993 (2003).
220.
Journal Article
Wagner, C., & Kopka, J. Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62, 887–900 (2003).