Publikationen von J. Kopka

Agrawal, S., Karcher, D., Ruf, S., Erban, A., Hertle, A. P., Kopka, J. & Bock, R. Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology doi:10.1093/plphys/kiab428

Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).

Franzisky, B. L., Geilfus, C.-M., Romo-Perez, M. L., Fehrle, I., Erban, A., Kopka, J. & Zorb, C. Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44, 870–884 (2021).

Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, A., Hincha, D. K. & Zuther, E. Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22, (2021).

Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).

Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).

Martinez-Seidel, F., Suwanchaikasem, P., Nie, S., Leeming, M. G., Firmino, A. A. P., Williamson, N. A., Kopka, J., Roessner, U. & Boughton, B. A. Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, (2021).

Melo, T. O., Franciscon, L., Brown, G., Kopka, J., Cunha, L., Martinez-Seidel, F., Madureira, L. A. D. S. & Hansel, F. A. Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, (2021).

Pries, C., Razaghi-Moghadam, Z., Kopka, J. & Nikoloski, Z. Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11, (2021).

Samo, N., Ebert, A., Kopka, J. & Mozgová, I. Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, (2021).

Sangpong, L., Khaksar, G., Pinsorn, P., Oikawa, A., Sasaki, R., Erban, A., Watanabe, M., Wangpaiboon, K., Tohge, T., Kopka, J., Hoefgen, R., Saito, K. & Sirikantaramas, S. Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 12, (2021).

Schaarschmidt, S., Lawas, L. M. F., Kopka, J., Jagadish, S. V. K. & Zuther, E. Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 44, 2034–2048 (2021).

Scheurer, N. M., Rajarathinam, Y., Timm, S., Kobler, C., Kopka, J., Hagemann, M. & Wilde, A. Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 12, (2021).

Schumacher, C., Krannich, C. T., Maletzki, L., Koehl, K. I., Kopka, J., Sprenger, H., Hincha, D. K., Seddig, S., Peters, R., Hamera, S., Zuther, E., Haas, M. & Horn, R. Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 12, (2021).

Schumacher, C., Thümecke, S., Schilling, F., Koehl, K. I., Kopka, J., Sprenger, H., Hincha, D. K., Walther, D., Seddig, S., Peters, R., Zuther, E., Haas, M. & Horn, R. Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.). International Journal of Molecular Sciences 22, (2021).

Takahashi, D., Johnson, K., Hao, P., Tuong, T., Erban, A., Sampathkumar, A., Bacic, A., Livingston III, D. P., Kopka, J., Kuroha, T., Yokoyama, R., Nishitani, K., Zuther, E. & Hincha, D. K. Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 44, 915–930 (2021).

Tedesco, S., Erban, A., Gupta, S., Kopka, J., Fevereiro, P., Kragler, F. & Pina, A. The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 11, (2021).

Cotton, C. A. R., Bernhardsgrütter, I., He, H., Burgener, S., Schulz, L., Paczia, N., Dronsella, B., Erban, A., Toman, S., Dempfle, M., de Maria, A., Kopka, J., Lindner, S. N., Erb, T. J. & Bar-Even, A. Underground isoleucine biosynthesis pathways in E. coli. eLife 9, (2020).

Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).

Haas, M., Sprenger, H., Zuther, E., Peters, R., Seddig, S., Walther, D., Kopka, J., Hincha, D. K. & Koehl, K. I. Can Metabolite- and Transcript-Based Selection for Drought Tolerance in Solanum tuberosum Replace Selection on Yield in Arid Environments? Frontiers in Plant Science 11, (2020).