Publikationen von J. Kopka

Brigante, F. I., Lucini Mas, A., Erban, A., Fehrle, I., Martinez-Seidel, F., Kopka, J., Wunderlin, D. A. & Baroni, M. V. Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, (2022).

Vyse, K., Fischer, A., Zajancauskaite, G., Erban, A., Kopka, J., Balazadeh, S. & Zuther, E. Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174, (2022).

Vyse, K., Schaarschmidt, S., Erban, A., Kopka, J. & Zuther, E. Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174, (2022).

Zhao, Y., Agrawal, N., Ghareeb, H., Habib, M. T., Dickmeis, S., Schwachtje, J., Iven, T. E., Kopka, J., Feussner, I. & Schirawski, J. The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi 8, (2022).

Treves, H., Küken, A., Arrivault, S., Ishihara, H., Hoppe, I., Erban, A., Höhne, M., Moraes, T. A., Kopka, J., Szymanski, J., Nikoloski, Z. & Stitt, M. Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, 78–91 (2021).

Martinez-Seidel, F., Hsieh, Y.-C., Walther, D., Kopka, J. & Firmino, A. A. P. COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, (2021).

Schaarschmidt, S., Glaubitz, U., Erban, A., Kopka, J. & Zuther, E. Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 22, (2021).

Pimentel, D., Amaro, R., Erban, A., Mauri, N., Soares, F., Rego, C., Martínez-Zapater, J. M., Mithöfer, A., Kopka, J. & Fortes, A. M. Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 72, 6544–6569 (2021).

Nieva, A. S., Romero, F. M., Erban, A., Carrasco, P., Ruiz, O. A. & Kopka, J. Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 7, (2021).

Gao, J., van Kleeff, P. J. M., de Boer, M. H., Erban, A., Kopka, J., Hincha, D. K. & de Boer, A. H. Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 12, (2021).

Agrawal, S., Karcher, D., Ruf, S., Erban, A., Hertle, A. P., Kopka, J. & Bock, R. Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 118, 637–652 (2021).

Lima, V. F., Erban, A., Daubermann, A. G., Freire, F. B. S., Porto, N. P., Cândido-Sobrinho, S. A., Medeiros, D. B., Schwarzländer, M., Fernie, A. R., dos Anjos, L., Kopka, J. & Daloso, D. M. Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 108, 1213–1233 (2021).

Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).

Franzisky, B. L., Geilfus, C.-M., Romo-Perez, M. L., Fehrle, I., Erban, A., Kopka, J. & Zorb, C. Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44, 870–884 (2021).

Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, A., Hincha, D. K. & Zuther, E. Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22, (2021).

Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).

Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).

Martinez-Seidel, F., Suwanchaikasem, P., Nie, S., Leeming, M. G., Firmino, A. A. P., Williamson, N. A., Kopka, J., Roessner, U. & Boughton, B. A. Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, (2021).

Melo, T. O., Franciscon, L., Brown, G., Kopka, J., Cunha, L., Martinez-Seidel, F., Madureira, L. A. D. S. & Hansel, F. A. Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, (2021).

Pries, C., Razaghi-Moghadam, Z., Kopka, J. & Nikoloski, Z. Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11, (2021).