Publications of the Group

301.

Journal Article

Usadel, B.; Poree, F.; Nagel, A.; Lohse, M.; Czedik-Eysenberg, A.; Stitt, M.: A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell and Environment 32 (9), pp. 1211 - 1229 (2009)

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302.

Journal Article

Voll, L. M.; Hajirezaei, M.-R.; Czogalla-Peter, C.; Lein, W.; Stitt, M.; Sonnewald, U.; Bornke, F.: Antisense inhibition of enolase strongly limits the metabolism of aromatic amino acids, but has only minor effects on respiration in leaves of transgenic tobacco plants. New Phytologist 184 (3), pp. 607 - 618 (2009)

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303.

Journal Article

Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)

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304.

Journal Article

Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)

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305.

Journal Article

Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)

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306.

Journal Article

Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)

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307.

Journal Article

Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)

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308.

Journal Article

Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)

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309.

Journal Article

Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)

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310.

Journal Article

Grigston, J. C.; Osuna, D.; Scheible, W.-R.; Liu, C.; Stitt, M.; Jones, A. M.: D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Letters 582 (25-26), pp. 3577 - 3584 (2008)

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311.

Journal Article

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

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312.

Journal Article

Kakar, K.; Wandrey, M.; Czechowski, T.; Gaertner, T.; Scheible, W.-R.; Stitt, M.; Torres-Jerez, I.; Xiao, Y.; Redman, J. C.; Wu, H. C. et al.; Cheung, F.; Town, C. D.; Udvardi, M. K.: A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4, p. 18 (2008)

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313.

Journal Article

Keurentjes, J. J. B.; Sulpice, R.; Gibon, Y.; Steinhauser, M.-C.; Fu, J. Y.; Koornneef, M.; Stitt, M.; Vreugdenhil, D.: Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9 (8), p. R129 (2008)

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314.

Journal Article

Leboeuf, E.; Immerzeel, P.; Gibon, Y.; Steup, M.; Pauly, M.: High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373 (1), pp. 9 - 17 (2008)

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315.

Journal Article

Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)

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316.

Journal Article

Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)

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317.

Journal Article

Lejay, L.; Wirth, J.; Pervent, M.; Cross, J. M. F.; Tillard, P.; Gojon, A.: Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiology 146 (4), pp. 2036 - 2053 (2008)

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318.

Journal Article

Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)

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319.

Journal Article

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

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320.

Journal Article

Nunes-Nesi, A.; Sulpice, R.; Gibon, Y.; Fernie, A. R.: The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany 59 (7), pp. 1675 - 1684 (2008)

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321.

Journal Article

Oliver, S. N.; Lunn, J. E.; Urbanczyk-Wochniak, E.; Lytovchenko, A.; van Dongen, J. T.; Faix, B.; Schmalzlin, E.; Fernie, A. R.; Geigenberger, P.: Decreased Expression of Cytosolic Pyruvate Kinase in Potato Tubers Leads to a Decline in Pyruvate Resulting in an in Vivo Repression of the Alternative Oxidase. Plant Physiology 148 (3), pp. 1640 - 1654 (2008)

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322.

Journal Article

Rautengarten, C.; Usadel, B.; Neumetzler, L.; Hartmann, J.; Buessis, D.; Altmann, T.: A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant Journal 54 (3), pp. 466 - 480 (2008)

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323.

Journal Article

Sienkiewicz-Porzucek, A.; Nunes-Nesi, A.; Sulpice, R.; Lisec, J.; Centeno, D. C.; Carillo, P.; Leisse, A.; Urbanczyk-Wochniak, E.; Fernie, A. R.: Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth. Plant Physiology 147 (1), pp. 115 - 127 (2008)

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324.

Journal Article

Sreenivasulu, N.; Usadel, B.; Winter, A.; Radchuk, V.; Scholz, U.; Stein, N.; Weschke, W.; Strickert, M.; Close, T. J.; Stitt, M. et al.; Graner, A.; Wobus, U.: Barley grain maturation and germination: Metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiology 146 (4), pp. 1738 - 1758 (2008)

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325.

Journal Article

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Retzlaff, K.; Hoehne, M.; Guenther, M.; Stitt, M.: Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146 (4), pp. 1834 - 1861 (2008)

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326.

Journal Article

Verdier, J.; Kakar, K.; Gallardo, K.; Le Signor, C.; Aubert, G.; Schlereth, A.; Town, C. D.; Udvardi, M. K.; Thompson, R. D.: Gene expression profiling of M-truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Molecular Biology 67 (6), pp. 567 - 580 (2008)

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327.

Journal Article

Ainsworth, E. A.; Rogers, A.; Leakey, A. D. B.; Heady, L. E.; Gibon, Y.; Stitt, M.; Schurr, U.: Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? Journal of Experimental Botany 58 (3), pp. 579 - 591 (2007)

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328.

Journal Article

Busch, F.; Huner, N. P. A.; Ensminger, I.: Increased air temperature during simulated autumn conditions does not increase photosynthetic carbon gain but affects the dissipation of excess energy in seedlings of the evergreen Conifer Jack Pine. Plant Physiology 143 (3), pp. 1242 - 1251 (2007)

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329.

Journal Article

Fieulaine, S.; Lunn, J. E.; Ferrer, J. L.: Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides. Proteins-Structure Function and Bioinformatics 68 (3), pp. 796 - 801 (2007)

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330.

Journal Article

Huege, J.; Sulpice, R.; Gibon, Y.; Lisec, J.; Koehl, K. I.; Kopka, J.: GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68 (16-18), pp. 2258 - 2272 (2007)

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331.

Journal Article

Lunn, J. E.: Gene families and evolution of trehalose metabolism in plants. Functional Plant Biology 34 (6), pp. 550 - 563 (2007)

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332.

Journal Article

Lunn, J. E.: Compartmentation in plant metabolism. Journal of Experimental Botany 58 (1), pp. 35 - 47 (2007)

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333.

Journal Article

Morcuende, R.; Bari, R.; Gibon, Y.; Zheng, W.; Pant, B. D.; Blaesing, O.; Usadel, B.; Czechowski, T.; Udvardi, M. K.; Stitt, M. et al.; Scheible, W.-R.: Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell and Environment 30 (1), pp. 85 - 112 (2007)

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334.

Journal Article

Nunes-Nesi, A.; Carrari, F.; Gibon, Y.; Sulpice, R.; Lytovchenko, A.; Fisahn, J.; Graham, J.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50 (6), pp. 1093 - 1106 (2007)

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335.

Journal Article

Osuna, D.; Usadel, B.; Morcuende, R.; Gibon, Y.; Blaesing, O. E.; Hoehne, M.; Gunter, M.; Kamlage, B.; Trethewey, R.; Scheible, W.-R. et al.; Stitt, M.: Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49 (3), pp. 463 - 491 (2007)

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336.

Journal Article

Rotter, A.; Usadel, B.; Baebler, S.; Stitt, M.; Gruden, K.: Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods 3, p. 10 (2007)

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337.

Journal Article

Strickert, M.; Sreenivasulu, N.; Usadel, B.; Seiffert, U.: Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinformatics 8, p. 165 (2007)

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338.

Journal Article

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

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339.

Journal Article

Sulpice, R.; Tschoep, H.; von Korff, M.; Buessis, D.; Usadel, B.; Hoehne, M.; Witucka-Wall, H.; Altmann, T.; Stitt, M.; Gibon, Y.: Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment 30 (9), pp. 1163 - 1175 (2007)

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340.

Journal Article

Tellstroem, V.; Usadel, B.; Thimm, O.; Stitt, M.; Kuester, H.; Niehaus, K.: The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiology 143 (2), pp. 825 - 837 (2007)

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341.

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Bari, R.; Pant, B. D.; Stitt, M.; Scheible, W.-R.: PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiology 141 (3), pp. 988 - 999 (2006)

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342.

Journal Article

Cross, J. M.; von Korff, M.; Altmann, T.; Bartzetko, L.; Sulpice, R.; Gibon, Y.; Palacios, N.; Stitt, M.: Variation of enzyme activities and metabolite levels in 24 arabidopsis accessions growing in carbon-limited conditions. Plant Physiology 142 (4), pp. 1574 - 1588 (2006)

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343.

Journal Article

Fritz, C.; Palacios-Rojas, N.; Feil, R.; Stitt, M.: Regulation of secondary metabolism by the carbon-nitrogen status in tobacco: nitrate inhibits large sectors of phenylpropanoid metabolism. Plant Journal 46 (4), pp. 533 - 548 (2006)

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344.

Journal Article

Gibon, Y.; Usadel, B.; Blaesing, O. E.; Kamlage, B.; Hoehne, M.; Trethewey, R.; Stitt, M.: Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7 (8), p. R76 (2006)

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345.

Journal Article

Kolbe, A.; Oliver, S. N.; Fernie, A. R.; Stitt, M.; van Dongen, J. T.; Geigenberger, P.: Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141 (2), pp. 412 - 422 (2006)

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346.

Journal Article

Lunn, J. E.; Feil, R.; Hendriks, J. H. M.; Gibon, Y.; Morcuende, R.; Osuna, D.; Scheible, W.-R.; Carillo, P.; Hajirezaei, M.-R.; Stitt, M.: Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochemical Journal 397 (1), pp. 139 - 148 (2006)

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347.

Journal Article

Rigano, V. D.; Vona, V.; Lobosco, O.; Carillo, P.; Lunn, J. E.; Carfagna, S.; Esposito, S.; Caiazzo, M.; Rigano, C.: Temperature dependence of nitrate reductase in the psychrophilic unicellular alga Koliella antarctica and the mesophilic alga Chlorella sorokiniana. Plant Cell and Environment 29 (7), pp. 1400 - 1409 (2006)

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348.

Journal Article

Rogers, A.; Gibon, Y.; Stitt, M.; Morgan, P. B.; Bernacchi, C. J.; Ort, D. R.; Long, S. P.: Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume. Plant Cell and Environment 29 (8), pp. 1651 - 1658 (2006)

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349.

Journal Article

Sveshnikov, D.; Ensminger, I.; Ivanov, A. G.; Campbell, D.; Lloyd, J.; Funk, C.; Huner, N. P. A.; Oquist, G.: Excitation energy partitioning and quenching during cold acclimation in Scots pine. Tree Physiology 26 (3), pp. 325 - 336 (2006)

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350.

Journal Article

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

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Journal Article (394)