Publications of the Group

Max Planck Institute of Molecular Plant Physiology

Journal Article (398)

301.

Journal Article

Ott, T.; Sullivan, J.; James, E. K.; Flemetakis, E.; Gunther, C.; Gibon, Y.; Ronson, C.; Udvardi, M. K.: Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules. Molecular Plant-Microbe Interactions 22 (7), pp. 800 - 808 (2009)

MPG.PuRe

302.

Journal Article

Piques, M.; Schulze, W. X.; Hoehne, M.; Usadel, B.; Gibon, Y.; Rohwer, J.; Stitt, M.: Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology 5, p. 314 (2009)

MPG.PuRe

303.

Journal Article

Rotter, A.; Camps, C.; Lohse, M.; Kappel, C.; Pilati, S.; Hren, M.; Stitt, M.; Coutos-Thevenot, P.; Moser, C.; Usadel, B. et al.; Delrot, S.; Gruden, K.: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine. BMC Plant Biology 9, p. 104 (2009)

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304.

Journal Article

Sulpice, R.; Pyl, E. T.; Ishihara, H.; Trenkamp, S.; Steinfath, M.; Witucka-Wall, H.; Gibon, Y.; Usadel, B.; Poree, F.; Piques, M. C. et al.; von Korff, M.; Steinhauser, M.-C.; Keurentjes, J. J. B.; Guenther, M.; Hoehne, M.; Selbig, J.; Fernie, A. R.; Altmann, T.; Stitt, M.: Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106 (25), pp. 10348 - 10353 (2009)

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305.

Journal Article

Usadel, B.; Poree, F.; Nagel, A.; Lohse, M.; Czedik-Eysenberg, A.; Stitt, M.: A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell and Environment 32 (9), pp. 1211 - 1229 (2009)

MPG.PuRe

306.

Journal Article

Voll, L. M.; Hajirezaei, M.-R.; Czogalla-Peter, C.; Lein, W.; Stitt, M.; Sonnewald, U.; Bornke, F.: Antisense inhibition of enolase strongly limits the metabolism of aromatic amino acids, but has only minor effects on respiration in leaves of transgenic tobacco plants. New Phytologist 184 (3), pp. 607 - 618 (2009)

MPG.PuRe

307.

Journal Article

Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)

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308.

Journal Article

Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)

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309.

Journal Article

Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)

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310.

Journal Article

Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)

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311.

Journal Article

Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)

MPG.PuRe

312.

Journal Article

Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)

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313.

Journal Article

Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)

MPG.PuRe

314.

Journal Article

Grigston, J. C.; Osuna, D.; Scheible, W.-R.; Liu, C.; Stitt, M.; Jones, A. M.: D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Letters 582 (25-26), pp. 3577 - 3584 (2008)

MPG.PuRe

315.

Journal Article

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

MPG.PuRe

316.

Journal Article

Kakar, K.; Wandrey, M.; Czechowski, T.; Gaertner, T.; Scheible, W.-R.; Stitt, M.; Torres-Jerez, I.; Xiao, Y.; Redman, J. C.; Wu, H. C. et al.; Cheung, F.; Town, C. D.; Udvardi, M. K.: A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4, p. 18 (2008)

MPG.PuRe

317.

Journal Article

Keurentjes, J. J. B.; Sulpice, R.; Gibon, Y.; Steinhauser, M.-C.; Fu, J. Y.; Koornneef, M.; Stitt, M.; Vreugdenhil, D.: Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9 (8), p. R129 (2008)

MPG.PuRe

318.

Journal Article

Leboeuf, E.; Immerzeel, P.; Gibon, Y.; Steup, M.; Pauly, M.: High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373 (1), pp. 9 - 17 (2008)

MPG.PuRe

319.

Journal Article

Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)

MPG.PuRe

320.

Journal Article

Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)

MPG.PuRe

321.

Journal Article

Lejay, L.; Wirth, J.; Pervent, M.; Cross, J. M. F.; Tillard, P.; Gojon, A.: Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiology 146 (4), pp. 2036 - 2053 (2008)

MPG.PuRe

322.

Journal Article

Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)

MPG.PuRe

323.

Journal Article

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

MPG.PuRe

324.

Journal Article

Nunes-Nesi, A.; Sulpice, R.; Gibon, Y.; Fernie, A. R.: The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany 59 (7), pp. 1675 - 1684 (2008)

MPG.PuRe

325.

Journal Article

Oliver, S. N.; Lunn, J. E.; Urbanczyk-Wochniak, E.; Lytovchenko, A.; van Dongen, J. T.; Faix, B.; Schmalzlin, E.; Fernie, A. R.; Geigenberger, P.: Decreased Expression of Cytosolic Pyruvate Kinase in Potato Tubers Leads to a Decline in Pyruvate Resulting in an in Vivo Repression of the Alternative Oxidase. Plant Physiology 148 (3), pp. 1640 - 1654 (2008)

MPG.PuRe

326.

Journal Article

Rautengarten, C.; Usadel, B.; Neumetzler, L.; Hartmann, J.; Buessis, D.; Altmann, T.: A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant Journal 54 (3), pp. 466 - 480 (2008)

MPG.PuRe

327.

Journal Article

Sienkiewicz-Porzucek, A.; Nunes-Nesi, A.; Sulpice, R.; Lisec, J.; Centeno, D. C.; Carillo, P.; Leisse, A.; Urbanczyk-Wochniak, E.; Fernie, A. R.: Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth. Plant Physiology 147 (1), pp. 115 - 127 (2008)

MPG.PuRe

328.

Journal Article

Sreenivasulu, N.; Usadel, B.; Winter, A.; Radchuk, V.; Scholz, U.; Stein, N.; Weschke, W.; Strickert, M.; Close, T. J.; Stitt, M. et al.; Graner, A.; Wobus, U.: Barley grain maturation and germination: Metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiology 146 (4), pp. 1738 - 1758 (2008)

MPG.PuRe

329.

Journal Article

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Retzlaff, K.; Hoehne, M.; Guenther, M.; Stitt, M.: Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146 (4), pp. 1834 - 1861 (2008)

MPG.PuRe

330.

Journal Article

Verdier, J.; Kakar, K.; Gallardo, K.; Le Signor, C.; Aubert, G.; Schlereth, A.; Town, C. D.; Udvardi, M. K.; Thompson, R. D.: Gene expression profiling of M-truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Molecular Biology 67 (6), pp. 567 - 580 (2008)

MPG.PuRe

331.

Journal Article

Ainsworth, E. A.; Rogers, A.; Leakey, A. D. B.; Heady, L. E.; Gibon, Y.; Stitt, M.; Schurr, U.: Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? Journal of Experimental Botany 58 (3), pp. 579 - 591 (2007)

MPG.PuRe

332.

Journal Article

Busch, F.; Huner, N. P. A.; Ensminger, I.: Increased air temperature during simulated autumn conditions does not increase photosynthetic carbon gain but affects the dissipation of excess energy in seedlings of the evergreen Conifer Jack Pine. Plant Physiology 143 (3), pp. 1242 - 1251 (2007)

MPG.PuRe

333.

Journal Article

Fieulaine, S.; Lunn, J. E.; Ferrer, J. L.: Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides. Proteins-Structure Function and Bioinformatics 68 (3), pp. 796 - 801 (2007)

MPG.PuRe

334.

Journal Article

Huege, J.; Sulpice, R.; Gibon, Y.; Lisec, J.; Koehl, K. I.; Kopka, J.: GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68 (16-18), pp. 2258 - 2272 (2007)

MPG.PuRe

335.

Journal Article

Lunn, J. E.: Gene families and evolution of trehalose metabolism in plants. Functional Plant Biology 34 (6), pp. 550 - 563 (2007)

MPG.PuRe

336.

Journal Article

Lunn, J. E.: Compartmentation in plant metabolism. Journal of Experimental Botany 58 (1), pp. 35 - 47 (2007)

MPG.PuRe

337.

Journal Article

Morcuende, R.; Bari, R.; Gibon, Y.; Zheng, W.; Pant, B. D.; Blaesing, O.; Usadel, B.; Czechowski, T.; Udvardi, M. K.; Stitt, M. et al.; Scheible, W.-R.: Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell and Environment 30 (1), pp. 85 - 112 (2007)

MPG.PuRe

338.

Journal Article

Nunes-Nesi, A.; Carrari, F.; Gibon, Y.; Sulpice, R.; Lytovchenko, A.; Fisahn, J.; Graham, J.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50 (6), pp. 1093 - 1106 (2007)

MPG.PuRe

339.

Journal Article

Osuna, D.; Usadel, B.; Morcuende, R.; Gibon, Y.; Blaesing, O. E.; Hoehne, M.; Gunter, M.; Kamlage, B.; Trethewey, R.; Scheible, W.-R. et al.; Stitt, M.: Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49 (3), pp. 463 - 491 (2007)

MPG.PuRe

340.

Journal Article

Rotter, A.; Usadel, B.; Baebler, S.; Stitt, M.; Gruden, K.: Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods 3, p. 10 (2007)

MPG.PuRe

341.

Journal Article

Strickert, M.; Sreenivasulu, N.; Usadel, B.; Seiffert, U.: Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinformatics 8, p. 165 (2007)

MPG.PuRe

342.

Journal Article

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

MPG.PuRe

343.

Journal Article

Sulpice, R.; Tschoep, H.; von Korff, M.; Buessis, D.; Usadel, B.; Hoehne, M.; Witucka-Wall, H.; Altmann, T.; Stitt, M.; Gibon, Y.: Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment 30 (9), pp. 1163 - 1175 (2007)

MPG.PuRe

344.

Journal Article

Tellstroem, V.; Usadel, B.; Thimm, O.; Stitt, M.; Kuester, H.; Niehaus, K.: The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiology 143 (2), pp. 825 - 837 (2007)

MPG.PuRe

345.

Journal Article

Bari, R.; Pant, B. D.; Stitt, M.; Scheible, W.-R.: PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiology 141 (3), pp. 988 - 999 (2006)

MPG.PuRe

346.

Journal Article

Cross, J. M.; von Korff, M.; Altmann, T.; Bartzetko, L.; Sulpice, R.; Gibon, Y.; Palacios, N.; Stitt, M.: Variation of enzyme activities and metabolite levels in 24 arabidopsis accessions growing in carbon-limited conditions. Plant Physiology 142 (4), pp. 1574 - 1588 (2006)

MPG.PuRe

347.

Journal Article

Fritz, C.; Palacios-Rojas, N.; Feil, R.; Stitt, M.: Regulation of secondary metabolism by the carbon-nitrogen status in tobacco: nitrate inhibits large sectors of phenylpropanoid metabolism. Plant Journal 46 (4), pp. 533 - 548 (2006)

MPG.PuRe

348.

Journal Article

Gibon, Y.; Usadel, B.; Blaesing, O. E.; Kamlage, B.; Hoehne, M.; Trethewey, R.; Stitt, M.: Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7 (8), p. R76 (2006)

MPG.PuRe

349.

Journal Article

Kolbe, A.; Oliver, S. N.; Fernie, A. R.; Stitt, M.; van Dongen, J. T.; Geigenberger, P.: Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141 (2), pp. 412 - 422 (2006)

MPG.PuRe

350.

Journal Article

Lunn, J. E.; Feil, R.; Hendriks, J. H. M.; Gibon, Y.; Morcuende, R.; Osuna, D.; Scheible, W.-R.; Carillo, P.; Hajirezaei, M.-R.; Stitt, M.: Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana. Biochemical Journal 397 (1), pp. 139 - 148 (2006)

MPG.PuRe