Publications of the Group

Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), pp. 136 - 149 (2008)

Cartieaux, F.; Contesto, C.; Gallou, A.; Desbrosses, G.; Kopka, J.; Taconnat, L.; Renou, J. P.; Touraine, B.: Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp strain ORS278 and Pseudomonas syriugae pv. tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions 21 (2), pp. 244 - 259 (2008)

Eisenhut, M.; Huege, J.; Schwarz, D.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolome Phenotyping of Inorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp Strain PCC 6803. Plant Physiology 148 (4), pp. 2109 - 2120 (2008)

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

Kempa, S.; Krasensky, J.; Dal Santo, S.; Kopka, J.; Jonak, C.: A Central Role of Abscisic Acid in Stress-Regulated Carbohydrate Metabolism. PLoS One 3 (12), p. e3935 (2008)

Koehl, K. I.; Basler, G.; Lüdemann, A.; Selbig, J.; Walther, D.: A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, p. 11 (2008)

Levine, L. H.; Kasahara, H.; Kopka, J.; Erban, A.; Fehrle, I.; Kaplan, F.; Zhao, W.; Littell, R. C.; Guy, C.; Wheeler, R. et al.; Sager, J.; Mills, A.; Levine, H. G.: Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide. Advances in Space Research 42 (12), pp. 1917 - 1928 (2008)

Lüdemann, A.; Strassburg, K.; Erban, A.; Kopka, J.: TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics 24 (5), pp. 732 - 737 (2008)

Sanchez, D. H.; Lippold, F.; Redestig, H.; Hannah, M. A.; Erban, A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant Journal 53 (6), pp. 973 - 987 (2008)

Sanchez, D. H.; Redestig, H.; Kraemer, U.; Udvardi, M. K.; Kopka, J.: Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping? Plant Signaling & Behavior 3 (8), pp. 598 - 600 (2008)

Strehmel, N.; Hummel, J.; Erban, A.; Strassburg, K.; Kopka, J.: Retention index thresholds for compound matching in GC-MS metabolite profiling. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 871 (2), pp. 182 - 190 (2008)

Guy, C.; Kopka, J.; Moritz, T.: Plant metabolomics coming of age. Physiologia Plantarum 132 (2), pp. 113 - 116 (2008)

Guy, C.; Kaplan, F.; Kopka, J.; Selbig, J.; Hincha, D. K.: Metabolomics of temperature stress. Physiologia Plantarum 132 (2), pp. 220 - 235 (2008)

Sanchez, D. H.; Siahpoosh, M. R.; Roessner, U.; Udvardi, M. K.; Kopka, J.: Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiologia Plantarum 132 (2), pp. 209 - 219 (2008)