Publications of S. Wienkoop

Hoehenwarter, W.; Larhlimi, A.; Hummel, J.; Egelhofer, V.; Selbig, J.; van Dongen, J. T.; Wienkoop, S.; Weckwerth, W.: MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10 (7), pp. 2979 - 2991 (2011)

Joshi, H. J.; Hirsch-Hoffmann, M.; Baerenfaller, K.; Gruissem, W.; Baginsky, S.; Schmidt, R.; Schulze, W. X.; Sun, Q.; van Wijk, K. J.; Egelhofer, V. et al.; Wienkoop, S.; Weckwerth, W.; Bruley, C.; Rolland, N.; Toyoda, T.; Nakagami, H.; Jones, A. M.; Briggs, S. P.; Castleden, I.; Tanz, S. K.; Millar, A. H.; Heazlewood, J. L.: MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155 (1), pp. 259 - 270 (2011)

Winck, F. V.; Kwasniewski, M.; Wienkoop, S.; Mueller-Roeber, B.: An Optimized Method for the Isolation of Nuclei from Chlamydomonas Reinhardtii (Chlorophyceae). Journal of Phycology 47 (2), pp. 333 - 340 (2011)

Wienkoop, S.; Weiss, J.; May, P.; Kempa, S.; Irgang, S.; Recuenco-Munoz, L.; Pietzke, M.; Schwemmer, T.; Rupprecht, J.; Egelhofer, V. et al.; Weckwerth, W.: Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Molecular Biosystems 6 (6), pp. 1018 - 1031 (2010)

Baessler, O. Y.; Weiss, J.; Wienkoop, S.; Lehmann, K.; Scheler, C.; Dolle, S.; Schwarz, D.; Franken, P.; George, E.; Worm, M. et al.; Weckwerth, W.: Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation-Mass Spectrometry and in Silico Epitope Modeling. Journal of Proteome Research 8 (3), pp. 1111 - 1122 (2009)

Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), pp. 82 - 91 (2009)

Larrainzar, E.; Wienkoop, S.; Scherling, C.; Kempa, S.; Ladrera, R.; Arrese-Igor, C.; Weckwerth, W.; Gonzalez, E. M.: Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22 (12), pp. 1565 - 1576 (2009)

Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)

Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)

May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)

Timm, S.; Nunes-Nesi, A.; Pamik, T.; Morgenthal, K.; Wienkoop, S.; Keerberg, O.; Weckwerth, W.; Kleczkowski, L. A.; Fernie, A. R.; Bauwe, H.: A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20 (10), pp. 2848 - 2859 (2008)

Wienkoop, S.; Morgenthal, K.; Wolschin, F.; Scholz, M.; Selbig, J.; Weckwerth, W.: Integration of metabolomic and proteomic phenotypes. Molecular & Cellular Proteomics 7 (9), pp. 1725 - 1736 (2008)

Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, p. 216 (2007)

Larrainzar, E.; Wienkoop, S.; Weckwerth, W.; Ladrera, R.; Arrese-Igor, C.; Gonzalez, E. M.: Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress. Plant Physiology 144 (3), pp. 1495 - 1507 (2007)

Wienkoop, S.; Larrainzar, E.; Niemann, M.; Gonzalez, E. M.; Lehmann, U.; Weckwerth, W.: Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics. Journal of Separation Science 29 (18), pp. 2793 - 2801 (2006)

Wienkoop, S.; Weckwerth, W.: Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. Journal of Experimental Botany 57 (7), pp. 1529 - 1535 (2006)

Boldt, R.; Edner, C.; Kolukisaoglu, U.; Hagemann, M.; Weckwerth, W.; Wienkoop, S.; Morgenthal, K.; Bauwe, H.: D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17 (8), pp. 2413 - 2420 (2005)

Morgenthal, K.; Wienkoop, S.; Scholz, M.; Selbig, J.; Weckwerth, W.: Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1 (2), pp. 109 - 121 (2005)

Wolschin, F.; Wienkoop, S.; Weckwerth, W.: Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 5 (17), pp. 4389 - 4397 (2005)

Wienkoop, S.; Glinski, M.; Tanaka, N.; Tolstikov, V.; Fiehn, O.; Weckwerth, W.: Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Communications in Mass Spectrometry 18 (6), pp. 643 - 650 (2004)