Publications of B. Usadel

Tohge, T.; Scossa, F.; Wendenburg, R.; Frasse, P.; Balbo, I.; Watanabe, M.; Alseekh, S.; Jadha, S. S.; Delfin, J. C.; Lohse, M. et al.; Giavalisco, P.; Usadel, B.; Zhang, Y.; Luo, J.; Bouzayen, M.; Fernie, A. R.: Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13 (7), pp. 1027 - 1046 (2020)

Cookson, S. J.; Yadav, U. P.; Klie, S.; Morcuende, R.; Usadel, B.; Lunn, J. E.; Stitt, M.: Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39 (4), pp. 768 - 786 (2016)

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Bolger, M. E.; Weisshaar, B.; Scholz, U.; Stein, N.; Usadel, B.; Mayer, K. F.: Plant genome sequencing — applications for crop improvement. Current Opinion in Biotechnology 26, pp. 31 - 37 (2014)

Ito, J.; Herter, T.; Baidoo, E. E.; Lao, J.; Vega-Sánchez, M. E.; Smith-Moritz, M. A.; Adams, P. D.; Keasling, J. D.; Usadel, B.; Petzold, C. J. et al.; Heazlewood, J. L.: Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Analytical Biochemistry 448, pp. 14 - 22 (2014)

Ramšak, Ž.; Baebler, Š.; Rotter, A.; Korbar, M.; Mozetič, I.; Usadel, B.; Gruden, K.: GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Research 42 (D1), pp. D1167 - D1175 (2014)

Lee, Y. P.; Giorgi, F. M.; Lohse, M.; Kvederaviciute, K.; Klages, S.; Usadel, B.; Meskiene, I.; Reinhardt, R.; Hincha, D. K.: Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). BMC Genomics 14, p. 793 - 793 (2013)

Li, J.-W.; Bolser, D.; Manske, M.; Giorgi, F.; Vyahhi, N.; Usadel, B.; Clavijo, B. J.; Chan, T.-F.; Wong, N.; Zerbino, D. et al.; Schneider, M. V.: The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings in Bioinformatics 14 (5), pp. 548 - 555 (2013)

Matsuba, Y.; Nguyen, T. T. H.; Wiegert, K.; Falar, V.; Gonzales-Vigil, E.; Leong, B.; Schaefer, P.; Kudrna, D.; Wing, R. A.; Bolger, A. M. et al.; Usadel, B.; Tissier, A.; Fernie, A. R.; Barry, C. S.; Pichersky, E.: Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 25 (6), pp. 2022 - 2036 (2013)

Fernie, A. R.; Usadel, B.: The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, p. 48 (2013)

Koenig, D.; Jimenez-Gomez, J. M.; Kimura, S.; Fulop, D.; Chitwood, D. H.; Headland, L. R.; Kumar, R.; Covington, M. F.; Devisetty, U. K.; Tat, A. V. et al.; Tohge, T.; Bolger, A. M.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S. M.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A. R.; Peng, J.; Sinha, N. R.; Maloof, J. N.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110 (28), pp. E2655 - E2662 (2013)

Müller, K.; Levesque-Tremblay, G.; Bartels, S.; Weitbrecht, K.; Wormit, A.; Usadel, B.; Haughn, G.; Kermode, A. R.: Demethylesterification of Cell Wall Pectins in Arabidopsis Plays a Role in Seed Germination1[W][OA]. Plant Physiology 161 (1), pp. 305 - 316 (2013)

Muller, K.; Levesque-Tremblay, G.; Fernandes, A.; Wormit, A.; Bartels, S.; Usadel, B.; Kermode, A.: Overexpression of a pectin methylesterase inhibitor in Arabidopsis thaliana leads to altered growth morphology of the stem and defective organ separation. Plant Signaling & Behavior 8 (12), e26464 (2013)

Pal, S. K.; Liput, M.; Piques, M.; Ishihara, H.; Obata, T.; Martins, M. C.; Sulpice, R.; van Dongen, J. T.; Fernie, A. R.; Yadav, U. P. et al.; Lunn, J. E.; Usadel, B.; Stitt, M.: Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. Plant Physiology 162 (3), pp. 1246 - 1265 (2013)

Usadel, B.; Schwacke, R.; Nagel, A.; Kersten, B.: GabiPD – The GABI Primary Database integrates plant proteomic data with gene-centric information. Frontiers in Plant Science 3, 154 (2012)

Araujo, W. L.; Tohge, T.; Osorio, S.; Lohse, M.; Balbo, I.; Krahnert, I.; Sienkiewicz-Porzucek, A.; Usadel, B.; Nunes-Nesi, A.; Fernie, A. R.: Antisense Inhibition of the 2-Oxoglutarate Dehydrogenase Complex in Tomato Demonstrates Its Importance for Plant Respiration and during Leaf Senescence and Fruit Maturation. The Plant Cell 24 (6), pp. 2328 - 2351 (2012)

Gouws, L. M.; Botes, E.; Wiese, A. J.; Trenkamp, S.; Torres-Jerez, I.; Tang, Y.; Hills, P. N.; Usadel, B.; Lloyd, J. R.; Fernie, A. R. et al.; Kossmann, J.; van der Merwe, M. J.: The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots. Frontiers in Plant Science 3, p. 120 (2012)

Li, J. W.; Robison, K.; Martin, M.; Sjodin, A.; Usadel, B.; Young, M.; Olivares, E. C.; Bolser, D. M.: The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Research 40 (Database issue), pp. D1313 - D1317 (2012)

Lohse, M.; Bolger, A. M.; Nagel, A.; Fernie, A. R.; Lunn, J. E.; Stitt, M.; Usadel, B.: RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research 40 (W1), pp. W622 - W627 (2012)

Neumetzler, L.; Humphrey, T.; Lumba, S.; Snyder, S.; Yeats, T. H.; Usadel, B.; Vasilevski, A.; Patel, J.; Rose, J. K. C.; Persson, S. et al.; Bonetta, D.: The FRIABLE1 Gene Product Affects Cell Adhesion in Arabidopsis. PLoS One 7 (8), p. e42914 (2012)