Publications of S. Klie

Cookson, S. J.; Yadav, U. P.; Klie, S.; Morcuende, R.; Usadel, B.; Lunn, J. E.; Stitt, M.: Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39 (4), pp. 768 - 786 (2016)

Ruprecht, C.; Mendrinna, A.; Tohge, T.; Sampathkumar, A.; Klie, S.; Fernie, A. R.; Nikoloski, Z.; Persson, S.; Mutwil, M.: FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170 (3), pp. 1878 - 1894 (2016)

Bordag, N.; Klie, S.; Juerchott, K.; Vierheller, J.; Schiewe, H.; Albrecht, V.; Tonn, J.-C.; Schwartz, C.; Schichor, C.; Selbig, J.: Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects. Scientific Reports 5, 15954 (2015)

Bellucci, E.; Bitocchi, E.; Ferrarini, A.; Benazzo, A.; Biagetti, E.; Klie, S.; Minio, A.; Rau, D.; Rodriguez, M.; Panziera, A. et al.; Venturini, L.; Attene, G.; Albertini, E.; Jackson, S. A.; Nanni, L.; Fernie, A. R.; Nikoloski, Z.; Bertorelle, G.; Delledonne, M.; Papa, R.: Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26 (5), pp. 1901 - 1912 (2014)

Guo, K.; Zou, W.; Feng, Y.; Zhang, M.; Zhang, J.; Tu, F.; Xie, G.; Wang, L.; Wang, Y.; Klie, S. et al.; Persson, S.; Peng, L.: An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics 15, 596 (2014)

Kleessen, S.; Klie, S.; Nikoloski, Z.: Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9 (8), e103637 (2014)

Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21 (6), pp. 428 - 445 (2014)

Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), pp. 55 - 68 (2014)

Rajasundaram, D.; Selbig, J.; Persson, S.; Klie, S.: Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells. Annals of Botany 114 (6), pp. 1109 - 23 (2014)

Kleessen, S.; Klie, S.; Nikoloski, Z.: Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales. The Plant Cell 25 (6), pp. 1917 - 1927 (2013)

Omranian, N.; Klie, S.; Mueller-Roeber, B.; Nikoloski, Z.: Network-Based Segmentation of Biological Multivariate Time Series. PLoS One 8 (5), p. e62974 (2013)

Hubberten, H.-M.; Klie, S.; Caldana, C.; Degenkolbe, T.; Willmitzer, L.; Hoefgen, R.: An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70 (4), pp. 666 - 677 (2012)

Klie, S.; Caldana, C.; Nikoloski, Z.: Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 3, p. 249 (2012)

Klie, S.; Nikoloski, Z.: The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 3, p. 115 (2012)

Caldana, C.; Degenkolbe, T.; Cuadros-Inostroza, A.; Klie, S.; Sulpice, R.; Leisse, A.; Steinhauser, D.; Fernie, A. R.; Willmitzer, L.; Hannah, M. A.: High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67 (5), pp. 869 - 884 (2011)

Klie, S.; Krueger, S.; Krall, L.; Giavalisco, P.; Fluegge, U.-I.; Willmitzer, L.; Steinhauser, D.: Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, p. 55 (2011)

Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), pp. 895 - 910 (2011)

Nikoloski, Z.; Grimbs, S.; Klie, S.; Selbig, J.: Complexity of automated gene annotation. Biosystems 104 (1), pp. 1 - 8 (2011)

Jozefczuk, S.; Klie, S.; Catchpole, G.; Szymanski, J.; Cuadros-Inostroza, A.; Steinhauser, D.; Selbig, J.; Willmitzer, L.: Metabolomic and transcriptomic stress response of Escherichia coli. Molecular Systems Biology 6, p. 364 (2010)

Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 17, pp. 1 - 18 (2010)