Publications of O. Thimm

Tellstroem, V.; Usadel, B.; Thimm, O.; Stitt, M.; Kuester, H.; Niehaus, K.: The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiology 143 (2), pp. 825 - 837 (2007)

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

Blaesing, O. E.; Gibon, Y.; Guenther, M.; Hoehne, M.; Morcuende, R.; Osuna, D.; Thimm, O.; Usadel, B.; Scheible, W.-R.; Stitt, M.: Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17 (12), pp. 3257 - 3281 (2005)

Scheible, W.-R.; Morcuende, R.; Czechowski, T.; Fritz, C.; Osuna, D.; Palacios-Rojas, N.; Schindelasch, D.; Thimm, O.; Udvardi, M. K.; Stitt, M.: Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology 136 (1), pp. 2483 - 2499 (2004)

Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), pp. 3647 - 3651 (2004)

Thimm, O.; Blaesing, O.; Gibon, Y.; Nagel, A.; Meyer, S.; Krueger, P.; Selbig, J.; Mueller, L. A.; Rhee, S. Y.; Stitt, M.: MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37 (6), pp. 914 - 939 (2004)

Stitt, M.; Blaesing, O.; Gibon, Y.; Thimm, O.; Scheible, W.-R.: Das Problem der Fuelle. Funktionelle Genomik von Kohlenhydrat- und Stickstoff-Stoffwechsel in Arabidopsis. GenomXpress 3, pp. 2 - 5 (2003)

Thimm, O.; Essigmann, B.; Kloska, S.; Altmann, T.; Buckhout, T. J.: Response of arabidopsis to iron deficiency stress as revealed by microarray analysis. Plant Physiology 127 (3), pp. 1030 - 1043 (2001)

Thimm, O.; Blaesing, O.; Usadel, B.; Gibon, Y.: Evaluation of the transcriptome and genome to inform the study of metabolic control in plants. In: Advances in Plant Research - Control of Primary Metabolism in Plants (Eds. Plaxton, W.; MacManus, M.). Blackwell Publ., Oxford, UK (2005)

Fluck, J.; Stitt, M.; Selbig, J.; Hofmann, M.; Thimm, O.: Using named entity recognition for ontology annotation: An experimental approach for Arabidopsis functional genome annotation. In: ECCB'05 Workshop on Biomedical Ontologies and Text Processing. ECCB'05 Workshop on Biomedical Ontologies and Text Processing, Madrid, ESP. (2005)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)