Publications of A. M. Bolger

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Bolger, A. M.; Lohse, M.; Usadel, B.: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (15), pp. 2114 - 2120 (2014)

Matsuba, Y.; Nguyen, T. T. H.; Wiegert, K.; Falar, V.; Gonzales-Vigil, E.; Leong, B.; Schaefer, P.; Kudrna, D.; Wing, R. A.; Bolger, A. M. et al.; Usadel, B.; Tissier, A.; Fernie, A. R.; Barry, C. S.; Pichersky, E.: Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 25 (6), pp. 2022 - 2036 (2013)

Koenig, D.; Jimenez-Gomez, J. M.; Kimura, S.; Fulop, D.; Chitwood, D. H.; Headland, L. R.; Kumar, R.; Covington, M. F.; Devisetty, U. K.; Tat, A. V. et al.; Tohge, T.; Bolger, A. M.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S. M.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A. R.; Peng, J.; Sinha, N. R.; Maloof, J. N.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110 (28), pp. E2655 - E2662 (2013)

Lohse, M.; Bolger, A. M.; Nagel, A.; Fernie, A. R.; Lunn, J. E.; Stitt, M.; Usadel, B.: RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research 40 (W1), pp. W622 - W627 (2012)

Nagel, A.; Lohse, M.; Bolger, A.; Bolger, A. M.; Stitt, M.; Usadel, B.: Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. Human Vision and Electronic Imaging Xvi 7865, p. 78650h (2011)

Giorgi, F. M.; Bolger, A. M.; Lohse, M.; Usadel, B.: Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinformatics 11, p. 553 (2010)

Dual Resistance of Melon to Fusarium oxysporum Races 0 and 2 and to Papaya ring-spot virus is Controlled by a Pair of Head-to-Head-Oriented NB-LRR Genes of Unusual Architecture.