Publications of J. Kopka

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)

Vyse, K.; Schaarschmidt, S.; Erban, A.; Kopka, J.; Zuther, E.: Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174 (4), e13740 (2022)

Zhao, Y.; Agrawal, N.; Ghareeb, H.; Habib, M. T.; Dickmeis, S.; Schwachtje, J.; Iven, T. E.; Kopka, J.; Feussner, I.; Schirawski, J.: The Sporisorium reilianum Effector Vag2 Promotes Head Smut Disease via Suppression of Plant Defense Responses. Journal of Fungi 8 (5), 498 (2022)

Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, pp. 78 - 91 (2021)

Martinez-Seidel, F.; Hsieh, Y.-C.; Walther, D.; Kopka, J.; Firmino, A.: COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, 605 (2021)

Schaarschmidt, S.; Glaubitz, U.; Erban, A.; Kopka, J.; Zuther, E.: Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 22 (19), 10451 (2021)

Pimentel, D.; Amaro, R.; Erban, A.; Mauri, N.; Soares, F.; Rego, C.; Martínez-Zapater, J.M.; Mithöfer, A.; Kopka, J.; Fortes, A.M.: Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 72 (18), pp. 6544 - 6569 (2021)

Nieva, A.S.; Romero, F. M.; Erban, A.; Carrasco, P.; Ruiz, O. A.; Kopka, J.: Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 7 (9), 765 (2021)

Gao, J.; van Kleeff, P.J.M.; de Boer, M.H.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A.H.: Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 12, 697324 (2021)

Agrawal, S.; Karcher, D.; Ruf, S.; Erban, A.; Hertle, A. P.; Kopka, J.; Bock, R.: Riboswitch-mediated inducible expression of an astaxanthin biosynthetic operon in plastids. Plant Physiology 118 (1), pp. 637 - 652 (2021)

Lima, V. F.; Erban, A.; Daubermann, A. G.; Freire, F. B. S.; Porto, N. P.; Cândido-Sobrinho, S. A.; Medeiros, D.B.; Schwarzländer, M.; Fernie, A. R.; dos Anjos, L. et al.; Kopka, J.; Daloso, D. M.: Establishment of a GC-MS-based 13C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. The Plant Journal 108 (4), pp. 1213 - 1233 (2021)

Cheong, B.E.; Beine-Golovchuk, O.; Gorka, M.; Ho, W.W.H.; Martinez-Seidel, F.; Firmino, A.; Skirycz, A.; Roessner, U.; Kopka, J.: Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11 (1), 2410 (2021)

Franzisky, B. L.; Geilfus, C.-M.; Romo-Perez, M. L.; Fehrle, I.; Erban, A.; Kopka, J.; Zorb, C.: Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44 (3), pp. 870 - 884 (2021)

Ginsawaeng, O.; Gorka, M.; Erban, A.; Heise, C.; Brueckner, F.; Hoefgen, R.; Kopka, J.; Skirycz, A.; Hincha, D. K.; Zuther, E.: Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22 (15), 8172 (2021)

Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)

Martinez-Seidel, F.; Beine-Golovchuk, O.; Hsieh, Y.-C.; El Eshraky, K.; Gorka, M.; Cheong, B.-E.; Jimenez‐posada, E.V.; Walther, D.; Skirycz, A.; Roessner, U. et al.; Kopka, J.; Firmino, A.: Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22 (11), 6160 (2021)

Martinez-Seidel, F.; Suwanchaikasem, P.; Nie, S.; Leeming, M.G.; Firmino, A.; Williamson, N.A.; Kopka, J.; Roessner, U.; Boughton, B.A.: Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, 656683 (2021)

Melo, T.O.; Franciscon, L.; Brown, G.; Kopka, J.; Cunha, L.; Martinez-Seidel, F.; Madureira, L.A.D.S.; Hansel, F.A.: Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, 100719 (2021)

Pries, C.; Razaghi-Moghadam, Z.; Kopka, J.; Nikoloski, Z.: Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11 (1), 4787 (2021)

Samo, N.; Ebert, A.; Kopka, J.; Mozgová, I.: Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, 102002 (2021)