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Urrea-Castellanos, R.; Calderan-Rodrigues, M.J.; Artins, A.; Musialak-Lange, M.; Macharanda-Ganesh, A.; Fernie, A. R.; Wahl, V.; Caldana, C.: The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122 (6), e2405536122 (2025)

Vicente, R.; Fernie, A. R.; Uberegui, E.: High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76 (4), pp. 904 - 908 (2025)

Yin, H.; Liu, W.; Hu, X.; Jia, J.; Liu, M.; Wei, J.; Cheng, Y.; Gong, X.; Li, Q.; Yan, W. et al.; Jia, J.; Gao, L.; Fernie, A. R.; Chen, W.: A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18 (2), pp. 366 - 382 (2025)

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

Barros, J.A.S.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W.L.: Transcriptional crosstalk linking color, acidity, and aroma in peach. Trends in Plant Science (2025)

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

Gramma, V.; Olas, J. J.; Zacharaki, V.; Ponnu, J.; Musialak-Lange, M.; Wahl, V.: Carbon and nitrogen signaling regulate FLOWERING LOCUS C and impact flowering time in Arabidopsis. Plant Physiology 197 (1), kiae594 (2025)

Hsieh, Y. E.; Tandon, K.; Verbruggen, H.; Nikoloski, Z.: Integration of metatranscriptomics data improves the predictive capacity of microbial community metabolic models. The ISME Journal 19 (1), wraf109 (2025)

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

Lindner, S. N.; Ralser, M.: The ability of pentose pathways to form all essential metabolites provides clues to the origins of metabolism. PLOS Biology 23 (1), e3002996 (2025)

Liu, M.-Y.; Jiao, Z.; Lou, H.; Tang, D.; Tian, X.; Zhou, B.-W.; Ruan, J.; Fernie, A. R.; Zhang, Q.: A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197 (1), kiae644 (2025)

López, C.; Alseekh, S.; Rivas, F.; Fernie, A. R.; Prieto, P.; Alamillo, J.: CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76 (2), pp. 346 - 362 (2025)

López-Tubau, J.; Laibach, N.; Burciaga-Monge, A.; Alseekh, S.; Deng, C.; Fernie, A. R.; Altabella, T.; Ferrer, A.: Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177 (1), e70022 (2025)

Mohr, M.; Satanowski, A.; Lindner, S.; Erb, T.; Andexer, J.: Rewiring Escherichia coli to transform formate into methyl groups. Microbial Cell Factories 24 (1), 55 (2025)

Nascimento, C.P.; da Fonseca-Pereira, P.; Ferreira-Silva, M.; Rosado-Souza, L.; Linka, N.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, 112310 (2025)

Tiozon, R. J. N.; Pasion-Uy, E.; Alseekh, S.; Sartagoda, K. J. D.; Gempesaw, S.; Tolentino, J. H. G.; Fernie, A. R.; Sreenivasulu, N.: Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, 1533442 (2025)

Wu, S.; Zhang, S.; Liu, C.-M.; Fernie, A. R.; Yan, S.: Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24 (1), 100887 (2025)

Wu, X.-X.; Li, F.; Zhu, C.; Sun, S.-Y.; Mu, W.-H.; Ruf, S.; Bock, R.; Zhang, Y.; Zhou, F.: Protocol for the purification of the plastid-encoded RNA polymerase from transplastomic tobacco plants. STAR Protocols 6 (1), 103528 (2025)