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Feng, X.; Meng, D.; Wang, Y.; Fernie, A. R.; Bai, C.; He, X.; Tao, J.; Zhou, X.; Ren, Y.; Zuo, J. et al.; Zheng, Y.: Chlorine dioxide affects metabolism of harvested cauliflower. Postharvest Biology and Technology 230, 113735 (2025)

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

Satanowski, A.; Marchal, D.G.; Perret, A.; Petit, J.-L.; Bouzon, M.; Döring, V.; Dubois, I.; He, H.; Smith, E.N.; Pellouin, V. et al.; Petri, H.M.; Rainaldi, V.; Nattermann, M.; Burgener, S.; Paczia, N.; Zarzycki, J.; Heinemann, M.; Bar-Even, A.; Erb, T.J.: Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation. Nature Communications 16 (1), 3134 (2025)

Török, A.I.; Cadar, O.; Kalapos, B.; Pál, M.; Szalai, G.; Mednyánszky, Z.; Gierczik, K.; Székely, A.; Simon-Sarkadi, L.; Kocsy, G.: Blue and far-red light modify the adaptation of Lemna minor L. to cadmium stress based on glutathione, phytochelatin, chemical element and free amino acid levels. Plant Stress 17, 100937 (2025)

Jia, X.; Zhang, X.; Chen, X.; Fernie, A. R.; Wen, W.: The horizontally transferred gene, CsMTAN, rewired purine traffic to build caffeine factories in tea leaves. Journal of Integrative Plant Biology (2025)

Rose, L. E.; Zangishei, Z.; Fernie, A. R.; Usadel, B.: Tomato genomics and its relatives are breaking the genomics barriers. Journal of Experimental Botany, eraf298 (2025)

Sacharowski, S.; Kubala, S.; Cwiek, P.; Steciuk, J.; Gratkowska-Zmuda, D.; Oksinska, P.; Bucior, E.; Rolicka, A.; Ciesla, M.; Nowicka, K. et al.; Alseekh, S.; Tohge, T.; Giavalisco, P.; Zugaj, D.; Stolze, S.; Harzen, A.; Franzen, R.; Huettel, B.; Grzesiuk, E.; Hajirezaei, M.; Nakagami, H.; Koncz, C.; Fernie, A. R.; Sarnowski, T.: BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis. New Phytologist 247 (2), pp. 791 - 812 (2025)

Wendering, P.; Andreou, G.M.; Laitinen, R.A.E.; Nikoloski, Z.: Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist 247 (1), pp. 178 - 190 (2025)

Zhao, T.; Vink, S.N.; Jia, X.; Erban, A.; Schaarschmidt, S.; Kopka, J.; Zuther, E.; Treder, K.; Michałowska, D.; Guyoneaud, R. et al.; Elzenga, J.T.M.; Attard, E.; Salles, J.F.: Unveiling Potato Cultivars With Microbiome Interactive Traits for Sustainable Agricultural Production. Plant, Cell and Environment (2025)

Dao, O.; Bertrand, M.; Alseekh, S.; Veillet, F.; Auroy, P.; Nguyen, P.-C.; Légeret, B.; Epting, V.; Morin, A.; Cuiné, S. et al.; Monteil, C. L.; Mackinder, L. C. M.; Burlacot, A.; Krieger-Liszkay, A.; Weber, A. P. M.; Fernie, A. R.; Peltier, G.; Li-Beisson, Y.: The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2. Nature Communications 16, 5296 (2025)

de Oliveira, P.; de Souza, L. P.; Ferreira, P.; Mauxion, J.; da Silva, L.; Chang, A.; Saleme, M.; Zhu, F.; Garcia, S.; De Beukelaer, H. et al.; Martins, M.; Rosado-Souza, L.; Pino, L.; Bollier, N.; Peres, L.; Vandepoele, K.; Goossens, A.; Gonzalez, N.; Fernie, A. R.; Eloy, N.: Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits. Plant Biotechnology Journal (2025)

Forner, J.: Genome modification in plant mitochondria. Plant Physiology 198 (2), kiaf197 (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, 154494 (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: The use of web resources for metabolomics in horticultural crops. Horticulture Advances 3, 18 (2025)

Liu, H.; El-Azaz, J.; Yobi, A.; Yokoyama, R.; Wu, S.; Chin-Quee, A.; Gorman, Z.; Angelovici, R.; Block, A.; Maeda, H. et al.; McCarty, D.; Suzuki, M.: Maize big embryo 6 reveals roles of plastidial and cytosolic prephenate aminotransferases in seed and plant development. Plant Cell 37 (6), koaf067 (2025)

Qin, K.; Liu, F.; Zhang, C.; Deng, R.; Fernie, A. R.; Zhang, Y.: Systems and synthetic biology for plant natural product pathway elucidation. Cell Reports Methods 44 (6), 115715 (2025)

Swain, J.; Fernie, A. R.; Foyer, C.H.; Gupta, K.J.: The Multifaceted Metabolic Role of Lactate Dehydrogenase in Submergence Tolerance. Plant, Cell and Environment (2025)

Tiozon, R. J. N.; Ong, G.; Sartagoda, K.; Duque, S.; Alseekh, S.; Bonto, A.; Gempesaw, S. J.; Pratap, V.; Reginio, F. J.; Tengco, J. et al.; Seagan, C.; Tolentino, J.; Santiago, D.; Fernie, A. R.; Sreenivasulu, N.: Optimization of phenolic extraction method and in vitro bioaccessibility of microencapsulated pigmented rice bran extracts and their antioxidant and anticancer properties. FOOD HYDROCOLLOIDS FOR HEALTH 7, 100221 (2025)

von Steimker, J.; Wendenburg, R.; Klemmer, A.; Rosaria, M.; Fernie, A. R.; Alseekh, S.; Tripodi, P.: Genome-wide association analysis and linkage mapping decipher the genetic control of primary metabolites and quality traits in Capsicum. The Plant Journal 122 (6), e70300 (2025)

Wagner, M.; Kang, J.; Mercado, C.; Thirumlaikumar, V. P.; Gorka, M.; Zillmer, H.; Guo, J.; Minen, R. I.; Plecki, C. F.; Dehesh, K. et al.; Schroeder, F. C.; Walther, D.; Skirycz, A.: Mapping protein-metabolite interactions in E. coli by integrating chromatographic techniques and co-fractionation mass spectrometry. iScience 28 (6), 112611 (2025)