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Luzarowski, M.; Wojciechowska, I.; Skirycz, A.: 2 in 1: One-step Affinity Purification for the Parallel Analysis of Protein-Protein and Protein-Metabolite Complexes. (2018)

Salem, M.A.; Bernach, M.; Bajdzienko, K.; Giavalisco, P.: A Simple Fractionated Extraction Method for the Comprehensive Analysis of Metabolites, Lipids, and Proteins from a Single Sample. (2017)

Stitt, M.: How Do Plants Regulate Their Behavior Based on Their Carbohydrate Resources? (2017)

Yu, Y.; Fotopoulos, V.; Zhou, K.; Fernie, A. R.: The role of gasotransmitter hydrogen sulfide in plant cadmium stress responses. Trends in Plant Science 30 (1), pp. 35 - 53 (2025)

Bulut, M.: Chemodiversity of sulfur-containing metabolites emphasizing the ecophysiology of Allium plants and the developmental innovations in bulb formation. Current Opinion in Plant Biology 85, 102724 (2025)

Lachica, M.K.E.; Watanabe, M.; Kanaya, S.; Fernie, A. R.; Tohge, T.: Prospects for functional genomics of genes involved in coffee-specialized metabolism through cross-species integrative omics. Current Opinion in Plant Biology 85, 102729 (2025)

Tiozon, R. J. N.; Lenaerts, B.; Kor, S.; Demont, M.; Fernie, A. R.; Sreenivasulu, N.: Low glycemic index rice: a healthier diet for countering diabetes epidemic in Asia. Trends in Plant Science 30 (6), pp. 603 - 614 (2025)

Tiozon, R. J. N.; Zhang, C.; Kim, S.-R.; Liu, Q.; Fernie, A. R.; Sreenivasulu, N.: Unlocking the potential of wild rice to bring the missing nutrition to elite grains. Plant Communications 6 (6), 101344 (2025)

Barreto, P.; Feitosa-Araujo, E.; Fernie, A. R.; Schwarzländer, M.: How to turbo charge respiration – thermogenic metabolism in plants. Current Opinion in Plant Biology 85, 102730 (2025)

Li, X.; Xie, C.; Cheng, L.; Tong, H.; Bock, R.; Qian, Q.; Zhou, W.: The next Green Revolution: integrating crop architectype and physiotype. Trends in Biotechnology (2025)

Liu, F.; Zhao, Z.; Fernie, A. R.; Zhang, Y.: Towards establishing functional nitrogenase activities within plants. Trends in Biotechnology (2025)

Cao, Y.; Chen, Q.; Xu, X.; Fernie, A. R.; Li, J.; Zhang, Y.: Insights from natural rubber biosynthesis evolution for pathway engineering. Trends in Plant Science (2025)

Fettke, J.; Fernie, A. R.: Do storage reserves contribute to plant phenotypic plasticity? Trends in Plant Science 30 (4), pp. 364 - 372 (2025)

Nievergelt, A. P.: Genome editing in the green alga Chlamydomonas: past, present practice and future prospects. The Plant Journal 122 (1), e70140 (2025)

Qin, K.; Ye, X.; Luo, S.; Fernie, A. R.; Zhang, Y.: Engineering carbon assimilation in plants. Journal of Integrative Plant Biology 67 (4), pp. 926 - 948 (2025)

Arend, M.; Paulitz, E.; Hsieh, Y.; Nikoloski, Z.: Scaling metabolic model reconstruction up to the pan-genome level: A systematic review and prospective applications to photosynthetic organisms. Metabolic Engineering 90, pp. 67 - 77 (2025)

Bulut, M.; Karakas, E.; Fernie, A. R.: Metabolic responses to multi-stress: An update. Plant Stress 15, 100729 (2025)

Bulut, M.; Karakas, E.; Fernie, A. R.: Adjustments of plant primary metabolism in the face of climate change. Journal of Experimental Botany, eraf116 (2025)

de Oliveira, H.O.; Siqueira, J.A.; Medeiros, D.B.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Harnessing the dynamics of plant organic acids metabolism following abiotic stresses. Plant Physiology and Biochemistry 220, 109465 (2025)

Jahan, T.; Huda, M.N.; Zhang, K.; He, Y.; Lai, D.; Dhami, N.; Quinet, M.; Ali, M.A.; Kreft, I.; Woo, S.-H. et al.; Georgiev, M.I.; Fernie, A. R.; Zhou, M.: Plant secondary metabolites against biotic stresses for sustainable crop protection. Biotechnology Advances 79, 108520 (2025)